PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22351-22400 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8954 | 94.0176 | 99.9548 | 27.2727 | 4369 | 278 | 4422 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8950 | 94.3201 | 99.6144 | 34.3188 | 13235 | 797 | 13433 | 52 | 50 | 96.1538 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8949 | 94.4670 | 99.4508 | 25.3587 | 6505 | 381 | 6519 | 36 | 36 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | * | 96.8948 | 94.3548 | 99.5754 | 80.7834 | 468 | 28 | 469 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8947 | 98.7270 | 95.1293 | 53.9091 | 7290 | 94 | 7285 | 373 | 354 | 94.9062 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.8939 | 95.6734 | 98.1460 | 66.3548 | 2543 | 115 | 2541 | 48 | 16 | 33.3333 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.8922 | 94.2909 | 99.6412 | 27.0291 | 10471 | 634 | 10553 | 38 | 38 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_siren | * | 96.8913 | 95.7977 | 98.0103 | 67.7918 | 140083 | 6145 | 140139 | 2845 | 1340 | 47.1002 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8912 | 97.3958 | 96.3918 | 85.9420 | 374 | 10 | 374 | 14 | 3 | 21.4286 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | * | 96.8910 | 95.7753 | 98.0329 | 87.0344 | 2131 | 94 | 2143 | 43 | 9 | 20.9302 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.8901 | 95.6863 | 98.1246 | 84.9192 | 1464 | 66 | 1465 | 28 | 18 | 64.2857 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.8901 | 95.6863 | 98.1246 | 84.9192 | 1464 | 66 | 1465 | 28 | 18 | 64.2857 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8899 | 94.7026 | 99.1807 | 52.6407 | 6543 | 366 | 6537 | 54 | 52 | 96.2963 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.8896 | 96.2236 | 97.5649 | 78.3480 | 637 | 25 | 601 | 15 | 9 | 60.0000 | |
| jlack-gatk | INDEL | D1_5 | map_siren | * | 96.8891 | 99.0932 | 94.7810 | 83.4660 | 3497 | 32 | 3505 | 193 | 13 | 6.7358 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8891 | 94.9885 | 98.8674 | 52.9255 | 3317 | 175 | 3317 | 38 | 38 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | * | 96.8890 | 96.7104 | 97.0682 | 71.9792 | 28370 | 965 | 28374 | 857 | 408 | 47.6079 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8889 | 95.6140 | 98.1982 | 81.0903 | 109 | 5 | 109 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | homalt | 96.8889 | 94.7826 | 99.0909 | 94.5893 | 109 | 6 | 109 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 96.8889 | 96.4602 | 97.3214 | 95.7656 | 109 | 4 | 109 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | het | 96.8885 | 95.4003 | 98.4238 | 87.4146 | 560 | 27 | 562 | 9 | 1 | 11.1111 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | * | 96.8884 | 97.0680 | 96.7095 | 73.1758 | 43998 | 1329 | 43998 | 1497 | 343 | 22.9125 | |
| cchapple-custom | INDEL | * | HG002compoundhet | het | 96.8882 | 95.2125 | 98.6240 | 55.6229 | 3898 | 196 | 50675 | 707 | 621 | 87.8359 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8875 | 94.6157 | 99.2711 | 52.0847 | 6537 | 372 | 6537 | 48 | 43 | 89.5833 | |
| dgrover-gatk | INDEL | D16_PLUS | * | hetalt | 96.8869 | 94.5680 | 99.3224 | 39.0920 | 1828 | 105 | 2052 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.8866 | 95.1220 | 98.7179 | 46.1140 | 312 | 16 | 308 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8861 | 95.1429 | 98.6945 | 35.5219 | 333 | 17 | 378 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8861 | 95.1429 | 98.6945 | 35.5219 | 333 | 17 | 378 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | * | 96.8855 | 97.8723 | 95.9184 | 93.9431 | 46 | 1 | 47 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 96.8848 | 96.0000 | 97.7860 | 84.7838 | 264 | 11 | 265 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8846 | 94.2337 | 99.6890 | 71.2433 | 621 | 38 | 641 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8846 | 94.2337 | 99.6890 | 71.2433 | 621 | 38 | 641 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | * | 96.8842 | 94.7609 | 99.1047 | 63.0486 | 11594 | 641 | 11623 | 105 | 78 | 74.2857 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8842 | 99.8788 | 94.0639 | 71.6321 | 824 | 1 | 824 | 52 | 50 | 96.1538 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8842 | 99.8788 | 94.0639 | 71.6321 | 824 | 1 | 824 | 52 | 50 | 96.1538 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8837 | 95.6479 | 98.1519 | 65.9512 | 3890 | 177 | 3877 | 73 | 64 | 87.6712 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.8834 | 96.9671 | 96.7998 | 38.7932 | 4476 | 140 | 4507 | 149 | 76 | 51.0067 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8834 | 98.0237 | 95.7692 | 92.4077 | 496 | 10 | 498 | 22 | 3 | 13.6364 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8830 | 96.2858 | 97.4877 | 51.4550 | 13273 | 512 | 13271 | 342 | 335 | 97.9532 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8828 | 94.3878 | 99.5134 | 33.1707 | 740 | 44 | 818 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.8827 | 94.2729 | 99.6411 | 27.0328 | 10469 | 636 | 10551 | 38 | 38 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | het | 96.8827 | 95.7525 | 98.0399 | 50.2469 | 19883 | 882 | 19757 | 395 | 351 | 88.8608 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.8807 | 95.6522 | 98.1413 | 91.1948 | 264 | 12 | 264 | 5 | 3 | 60.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.8806 | 98.3570 | 95.4480 | 86.8027 | 1317 | 22 | 1321 | 63 | 6 | 9.5238 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.8801 | 95.1613 | 98.6622 | 81.1713 | 295 | 15 | 295 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |