PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21951-22000 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0060 | 95.2941 | 98.7805 | 84.6154 | 81 | 4 | 81 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.0060 | 94.7368 | 99.3865 | 93.6477 | 162 | 9 | 162 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | het | 97.0055 | 97.8723 | 96.1538 | 91.2014 | 46 | 1 | 50 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | segdup | het | 97.0051 | 96.3165 | 97.7035 | 93.8034 | 1412 | 54 | 1404 | 33 | 20 | 60.6061 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | het | 97.0048 | 97.6654 | 96.3532 | 88.1294 | 502 | 12 | 502 | 19 | 1 | 5.2632 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.0047 | 94.2890 | 99.8816 | 37.0370 | 2493 | 151 | 2530 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0046 | 95.1501 | 98.9328 | 56.4186 | 3708 | 189 | 3708 | 40 | 39 | 97.5000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 97.0041 | 98.7467 | 95.3219 | 88.2074 | 1891 | 24 | 1895 | 93 | 8 | 8.6022 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0036 | 97.5124 | 96.5000 | 88.7577 | 196 | 5 | 193 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0035 | 98.2095 | 95.8267 | 71.5438 | 2962 | 54 | 3008 | 131 | 4 | 3.0534 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.0018 | 97.1731 | 96.8310 | 69.5931 | 275 | 8 | 275 | 9 | 9 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.0005 | 94.7368 | 99.3750 | 91.2807 | 144 | 8 | 159 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0004 | 98.7335 | 95.3271 | 68.1496 | 3820 | 49 | 3774 | 185 | 180 | 97.2973 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | * | 96.9996 | 97.2763 | 96.7245 | 93.1872 | 500 | 14 | 502 | 17 | 4 | 23.5294 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9984 | 94.8103 | 99.2899 | 54.8611 | 1699 | 93 | 1678 | 12 | 9 | 75.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9979 | 94.5701 | 99.5536 | 89.9281 | 209 | 12 | 223 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9977 | 95.0226 | 99.0566 | 91.2215 | 210 | 11 | 210 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m0_e0 | * | 96.9974 | 97.1242 | 96.8709 | 93.8566 | 743 | 22 | 743 | 24 | 4 | 16.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.9972 | 95.6522 | 98.3806 | 89.7744 | 484 | 22 | 486 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9969 | 94.8995 | 99.1890 | 42.3293 | 1228 | 66 | 1223 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | * | 96.9968 | 98.4146 | 95.6193 | 80.2097 | 10739 | 173 | 10739 | 492 | 89 | 18.0894 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | * | 96.9967 | 97.5098 | 96.4889 | 90.2658 | 744 | 19 | 742 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9960 | 94.1673 | 100.0000 | 24.9114 | 3794 | 235 | 3813 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.9960 | 97.6240 | 96.3760 | 83.1102 | 945 | 23 | 851 | 32 | 22 | 68.7500 | |
| raldana-dualsentieon | SNP | tv | HG002compoundhet | * | 96.9959 | 94.2620 | 99.8931 | 47.1699 | 8411 | 512 | 8410 | 9 | 5 | 55.5556 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9957 | 96.5812 | 97.4138 | 92.7318 | 113 | 4 | 113 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.9948 | 94.8276 | 99.2634 | 69.4944 | 440 | 24 | 539 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9945 | 94.1645 | 100.0000 | 38.4968 | 1065 | 66 | 1072 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9940 | 99.1803 | 94.9020 | 71.6981 | 484 | 4 | 484 | 26 | 22 | 84.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | * | * | 96.9939 | 96.6915 | 97.2981 | 56.7713 | 141890 | 4855 | 141954 | 3942 | 3509 | 89.0157 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9932 | 96.6906 | 97.2976 | 45.4909 | 9145 | 313 | 9145 | 254 | 242 | 95.2756 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9927 | 99.4152 | 94.6855 | 62.3980 | 850 | 5 | 873 | 49 | 1 | 2.0408 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.9916 | 95.5731 | 98.4528 | 83.7652 | 1209 | 56 | 1209 | 19 | 11 | 57.8947 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | * | 96.9914 | 94.9292 | 99.1450 | 56.0917 | 6440 | 344 | 6378 | 55 | 35 | 63.6364 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | * | 96.9907 | 97.3734 | 96.6111 | 87.1158 | 3596 | 97 | 3592 | 126 | 19 | 15.0794 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9904 | 94.8590 | 99.2198 | 62.4389 | 2288 | 124 | 2289 | 18 | 13 | 72.2222 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9900 | 95.2557 | 98.7886 | 47.4309 | 13131 | 654 | 13129 | 161 | 155 | 96.2733 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.9895 | 96.1722 | 97.8208 | 47.4555 | 402 | 16 | 404 | 9 | 7 | 77.7778 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9885 | 94.6447 | 99.4513 | 62.5582 | 5620 | 318 | 6163 | 34 | 32 | 94.1176 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.9882 | 97.7573 | 96.2312 | 67.1549 | 1482 | 34 | 1532 | 60 | 2 | 3.3333 | |
| egarrison-hhga | INDEL | D1_5 | * | * | 96.9873 | 96.8033 | 97.1720 | 57.4559 | 142054 | 4691 | 142118 | 4136 | 3666 | 88.6364 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9869 | 94.2259 | 99.9146 | 34.2135 | 1126 | 69 | 1170 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9869 | 94.4529 | 99.6605 | 29.5910 | 10489 | 616 | 10569 | 36 | 36 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | * | 96.9865 | 96.5986 | 97.3774 | 87.3376 | 852 | 30 | 854 | 23 | 3 | 13.0435 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.9859 | 98.1225 | 95.8753 | 79.7750 | 1986 | 38 | 1999 | 86 | 3 | 3.4884 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9853 | 94.2753 | 99.8558 | 44.2957 | 2075 | 126 | 2077 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | * | 96.9852 | 94.9521 | 99.1073 | 33.0128 | 8333 | 443 | 8215 | 74 | 67 | 90.5405 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | homalt | 96.9842 | 97.0894 | 96.8792 | 89.5683 | 467 | 14 | 714 | 23 | 23 | 100.0000 | |