PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21351-21400 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.1889 | 99.5294 | 94.9560 | 60.6805 | 17767 | 84 | 17150 | 911 | 86 | 9.4402 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1888 | 99.1803 | 95.2756 | 71.1364 | 484 | 4 | 484 | 24 | 19 | 79.1667 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 86.5052 | 121 | 7 | 117 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1888 | 97.5806 | 96.8000 | 90.9157 | 121 | 3 | 121 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 90.5910 | 121 | 7 | 121 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1888 | 99.1803 | 95.2756 | 95.1729 | 121 | 1 | 121 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 97.1888 | 96.0317 | 98.3740 | 91.3136 | 121 | 5 | 121 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 97.1888 | 96.0317 | 98.3740 | 91.4226 | 121 | 5 | 121 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 97.1888 | 95.2756 | 99.1803 | 49.7942 | 121 | 6 | 121 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 88.6704 | 121 | 7 | 121 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | homalt | 97.1883 | 95.2678 | 99.1879 | 78.6252 | 3664 | 182 | 3664 | 30 | 6 | 20.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | homalt | 97.1880 | 94.7774 | 99.7245 | 70.3593 | 1107 | 61 | 1086 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1877 | 98.8032 | 95.6242 | 60.3774 | 743 | 9 | 743 | 34 | 34 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1875 | 96.2685 | 98.1242 | 59.9927 | 30236 | 1172 | 30236 | 578 | 510 | 88.2353 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1875 | 96.2685 | 98.1242 | 59.9927 | 30236 | 1172 | 30236 | 578 | 510 | 88.2353 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | homalt | 97.1871 | 94.8136 | 99.6825 | 79.8291 | 7221 | 395 | 7222 | 23 | 14 | 60.8696 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1871 | 95.2331 | 99.2231 | 35.3659 | 899 | 45 | 894 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.1870 | 94.8387 | 99.6546 | 75.9352 | 588 | 32 | 577 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.1867 | 94.5274 | 100.0000 | 89.0230 | 190 | 11 | 191 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1850 | 95.5951 | 98.8287 | 37.6825 | 1237 | 57 | 1350 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1847 | 95.8015 | 98.6083 | 75.1972 | 502 | 22 | 496 | 7 | 4 | 57.1429 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1847 | 94.5662 | 99.9523 | 34.2023 | 2071 | 119 | 2094 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | * | 97.1847 | 94.6538 | 99.8547 | 80.7686 | 7560 | 427 | 7560 | 11 | 4 | 36.3636 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1839 | 94.9785 | 99.4942 | 28.3420 | 9949 | 526 | 10032 | 51 | 50 | 98.0392 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1837 | 96.7573 | 97.6138 | 51.8740 | 13338 | 447 | 13336 | 326 | 319 | 97.8528 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1835 | 94.5513 | 99.9664 | 44.3822 | 2950 | 170 | 2979 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | * | 97.1833 | 96.6423 | 97.7304 | 89.4395 | 3569 | 124 | 3574 | 83 | 16 | 19.2771 | |
| astatham-gatk | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 53.6424 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1831 | 95.8333 | 98.5714 | 77.4194 | 69 | 3 | 69 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 45.3125 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1831 | 97.1831 | 97.1831 | 91.2562 | 69 | 2 | 69 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.1826 | 99.5074 | 94.9640 | 83.8841 | 606 | 3 | 528 | 28 | 21 | 75.0000 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | * | 97.1814 | 96.7122 | 97.6551 | 80.7455 | 31151 | 1059 | 31151 | 748 | 233 | 31.1497 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | homalt | 97.1812 | 96.6667 | 97.7011 | 75.2841 | 87 | 3 | 85 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1807 | 95.9350 | 98.4592 | 79.2386 | 236 | 10 | 639 | 10 | 6 | 60.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1797 | 95.6882 | 98.7185 | 59.2515 | 2308 | 104 | 2311 | 30 | 19 | 63.3333 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.1791 | 97.0465 | 97.3121 | 78.1370 | 16002 | 487 | 16002 | 442 | 119 | 26.9231 | |
| mlin-fermikit | SNP | ti | * | hetalt | 97.1781 | 94.6735 | 99.8188 | 32.3529 | 551 | 31 | 551 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1776 | 96.3907 | 97.9775 | 74.4326 | 908 | 34 | 872 | 18 | 13 | 72.2222 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.1768 | 97.7361 | 96.6239 | 63.2047 | 6044 | 140 | 5953 | 208 | 24 | 11.5385 | |
| jli-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 97.1767 | 94.5414 | 99.9630 | 28.7734 | 8071 | 466 | 8109 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | het | 97.1764 | 97.3825 | 96.9713 | 77.3988 | 1637 | 44 | 1889 | 59 | 41 | 69.4915 | |
| qzeng-custom | INDEL | * | * | het | 97.1762 | 98.2811 | 96.0960 | 58.8639 | 190796 | 3337 | 217691 | 8844 | 3946 | 44.6178 | |