PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21301-21350 / 86044 show all
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.2043
97.0166
97.3928
54.4393
1095933710945293257
87.7133
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2034
96.5701
97.8450
55.8440
36602130036414802774
96.5087
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.2031
96.0157
98.4203
68.4990
537422353588674
86.0465
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
97.2031
95.3757
99.1018
76.8377
3301633133
100.0000
gduggal-bwafbINDELI1_5map_sirenhet
97.2030
95.6573
98.7995
79.6283
16087316462010
50.0000
jmaeng-gatkINDELI1_5map_l100_m0_e0*
97.2027
98.8950
95.5674
89.4362
5376539253
12.0000
gduggal-snapfbSNPtimap_l150_m2_e1homalt
97.2023
94.8395
99.6858
79.8530
729639772972314
60.8696
dgrover-gatkINDEL*map_l125_m0_e0het
97.2014
97.4446
96.9595
91.3349
57215574182
11.1111
ckim-gatkINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.2012
96.5257
97.8862
78.6532
63923602137
53.8462
ghariani-varprowlINDELI1_5map_l150_m1_e0homalt
97.2010
96.4646
97.9487
82.7586
191719142
50.0000
ckim-dragenSNP*map_l250_m1_e0*
97.2004
97.5768
96.8269
89.0554
7047175704923129
12.5541
hfeng-pmm1INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2004
94.5833
99.9665
44.9492
2951169298011
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2001
95.1599
99.3297
61.6253
800240780025447
87.0370
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.1997
99.7848
94.7452
59.6307
8348188348463461
99.5680
gduggal-bwafbSNP*map_l250_m0_e0*
97.1993
96.7213
97.6821
93.5570
20657020654915
30.6122
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.1991
98.2644
96.1566
80.7160
14722613265319
35.8491
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.1991
98.9214
95.5357
68.5540
64276423030
100.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.1986
94.7313
99.7979
56.1836
54303025431119
81.8182
eyeh-varpipeSNPtiHG002compoundhethomalt
97.1981
99.5131
94.9883
44.4780
735836244512950
38.7597
ckim-vqsrINDEL*map_l100_m1_e0*
97.1981
96.6815
97.7202
88.7691
346711934728116
19.7531
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50het
97.1980
95.1981
99.2838
34.4662
10884549109517911
13.9241
ltrigg-rtg2INDELI1_5map_l125_m2_e1het
97.1976
95.6693
98.7755
80.7617
4862248460
0.0000
cchapple-customSNPtvmap_l100_m2_e0*
97.1975
97.9028
96.5023
71.7198
2450852524500888133
14.9775
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.1966
96.0492
98.3718
68.1010
1711570416736277229
82.6715
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.1963
94.5455
100.0000
63.9456
5235300
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.1963
94.5455
100.0000
61.5942
5235300
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.1957
95.2092
99.2668
33.4959
15707917601313
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1952
95.9411
98.4824
66.8225
18918018172810
35.7143
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1952
95.9411
98.4824
66.8225
18918018172810
35.7143
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1945
95.5607
98.8851
56.8401
372417337254235
83.3333
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1940
95.0822
99.4017
40.6176
647733564803939
100.0000
astatham-gatkINDELD1_5map_sirenhet
97.1940
95.7839
98.6462
82.2862
2181962186302
6.6667
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1938
95.0545
99.4316
25.2614
453623645482626
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1935
96.8999
97.4889
57.0530
36727117536532941927
98.5122
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.1924
95.1464
99.3283
34.1625
113758118388
100.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_11to50het
97.1923
94.8440
99.6599
28.7215
43782384395150
0.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1922
94.7487
99.7651
35.9534
167893169944
100.0000
gduggal-snapfbSNPtvmap_l150_m1_e0homalt
97.1916
95.1597
99.3122
81.5059
37551913754266
23.0769
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.1915
99.5930
94.9031
45.9580
18109741742893671
7.5855
jlack-gatkINDELI16_PLUSHG002complexvar*
97.1912
96.4859
97.9070
66.9992
12634612632723
85.1852
ckim-dragenINDELI6_15segdup*
97.1910
98.8571
95.5801
93.3013
173217380
0.0000
ltrigg-rtg1INDELD6_15segduphet
97.1910
96.7391
97.6471
92.1803
8938320
0.0000
ltrigg-rtg1INDEL*map_l125_m1_e0*
97.1910
95.2065
99.2600
81.6893
20061012012153
20.0000
ltrigg-rtg2INDEL*HG002compoundhethetalt
97.1901
94.8491
99.6495
57.3566
238831297238828483
98.8095
dgrover-gatkINDELI6_15map_siren*
97.1901
96.3934
98.0000
85.1852
2941129464
66.6667
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1899
94.5335
100.0000
30.3194
3597208362200
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.1896
94.7427
99.7662
39.0209
2541141256066
100.0000
jpowers-varprowlSNPtvmap_l125_m2_e1*
97.1894
97.0523
97.3269
78.1843
1616649116166444120
27.0270
cchapple-customINDELD6_15HG002complexvarhet
97.1892
96.5064
97.8818
52.6751
301110939748677
89.5349
ckim-dragenINDELI1_5map_l100_m1_e0*
97.1890
96.8633
97.5169
84.0762
1297421296338
24.2424