PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21051-21100 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2779 | 95.1269 | 99.5285 | 62.9323 | 8843 | 453 | 8865 | 42 | 42 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.2777 | 94.8052 | 99.8826 | 40.8681 | 1679 | 92 | 1701 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | het | 97.2776 | 99.5499 | 95.1068 | 80.0626 | 12607 | 57 | 12245 | 630 | 17 | 2.6984 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | hetalt | 97.2768 | 95.5357 | 99.0826 | 91.7674 | 107 | 5 | 108 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2768 | 95.4919 | 99.1297 | 62.3353 | 6037 | 285 | 6037 | 53 | 43 | 81.1321 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2768 | 95.4919 | 99.1297 | 62.3353 | 6037 | 285 | 6037 | 53 | 43 | 81.1321 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2766 | 97.0297 | 97.5248 | 90.6741 | 196 | 6 | 197 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | het | 97.2764 | 97.2566 | 97.2962 | 48.7706 | 17690 | 499 | 17129 | 476 | 444 | 93.2773 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.2757 | 97.3404 | 97.2112 | 60.3476 | 732 | 20 | 732 | 21 | 21 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | hetalt | 97.2753 | 94.7119 | 99.9812 | 62.6532 | 10603 | 592 | 10662 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2751 | 96.4259 | 98.1395 | 51.6854 | 1268 | 47 | 1266 | 24 | 20 | 83.3333 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2748 | 97.9551 | 96.6038 | 68.7500 | 1485 | 31 | 1536 | 54 | 2 | 3.7037 | |
| bgallagher-sentieon | SNP | * | map_l250_m0_e0 | het | 97.2742 | 98.3400 | 96.2313 | 93.6672 | 1481 | 25 | 1481 | 58 | 7 | 12.0690 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | * | 97.2740 | 96.8268 | 97.7253 | 93.8542 | 1068 | 35 | 1117 | 26 | 21 | 80.7692 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2727 | 95.5357 | 99.0741 | 72.3785 | 107 | 5 | 107 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2725 | 95.2756 | 99.3548 | 67.4370 | 121 | 6 | 154 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2724 | 97.0924 | 97.4530 | 45.0586 | 9183 | 275 | 9183 | 240 | 235 | 97.9167 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | het | 97.2721 | 98.6880 | 95.8962 | 82.5739 | 12712 | 169 | 12712 | 544 | 123 | 22.6103 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2714 | 95.0174 | 99.6350 | 76.9941 | 820 | 43 | 819 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.2713 | 95.1718 | 99.4655 | 60.8421 | 8003 | 406 | 8002 | 43 | 27 | 62.7907 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | het | 97.2713 | 99.3060 | 95.3184 | 75.1777 | 15310 | 107 | 15311 | 752 | 97 | 12.8989 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2704 | 94.7044 | 99.9793 | 59.1395 | 9675 | 541 | 9675 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | het | 97.2703 | 95.5155 | 99.0909 | 86.8763 | 1853 | 87 | 1853 | 17 | 8 | 47.0588 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002complexvar | hetalt | 97.2701 | 94.6852 | 100.0000 | 56.4680 | 1158 | 65 | 1198 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.2698 | 98.4163 | 96.1497 | 78.7844 | 3853 | 62 | 3571 | 143 | 49 | 34.2657 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2696 | 97.9874 | 96.5623 | 64.0273 | 12269 | 252 | 13595 | 484 | 266 | 54.9587 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.2690 | 95.1945 | 99.4359 | 31.3606 | 1248 | 63 | 1234 | 7 | 4 | 57.1429 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2689 | 97.4195 | 97.1188 | 75.1529 | 4870 | 129 | 4854 | 144 | 103 | 71.5278 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2689 | 97.4195 | 97.1188 | 75.1529 | 4870 | 129 | 4854 | 144 | 103 | 71.5278 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.2687 | 95.4802 | 99.1254 | 71.1036 | 338 | 16 | 340 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2686 | 98.7673 | 95.8146 | 68.2034 | 641 | 8 | 641 | 28 | 28 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.1911 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.2678 | 96.7391 | 97.8022 | 91.0404 | 267 | 9 | 267 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.7143 | 89 | 1 | 89 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2669 | 96.0317 | 98.5342 | 65.6983 | 605 | 25 | 605 | 9 | 6 | 66.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.2668 | 95.4918 | 99.1091 | 81.8292 | 466 | 22 | 445 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | hetalt | 97.2668 | 94.7680 | 99.9010 | 47.1204 | 960 | 53 | 1009 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.2655 | 94.7083 | 99.9646 | 39.5202 | 5584 | 312 | 5645 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.2655 | 94.7083 | 99.9646 | 39.5202 | 5584 | 312 | 5645 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2654 | 95.0470 | 99.5898 | 58.5927 | 9710 | 506 | 9711 | 40 | 39 | 97.5000 | |
| jlack-gatk | INDEL | D1_5 | func_cds | * | 97.2644 | 100.0000 | 94.6746 | 52.7933 | 159 | 0 | 160 | 9 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2641 | 99.2497 | 95.3564 | 60.4398 | 1455 | 11 | 1458 | 71 | 8 | 11.2676 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | homalt | 97.2638 | 95.1377 | 99.4870 | 75.4317 | 11055 | 565 | 11055 | 57 | 21 | 36.8421 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2633 | 96.3376 | 98.2070 | 76.6197 | 1210 | 46 | 1205 | 22 | 4 | 18.1818 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | het | 97.2633 | 97.2441 | 97.2826 | 84.5216 | 494 | 14 | 716 | 20 | 12 | 60.0000 | |