PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2051-2100 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.0986 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5116 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.5578 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.0000 | 14 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.1319 | 29 | 0 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.6970 | 30 | 0 | 30 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.0000 | 31 | 0 | 31 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.1791 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.7586 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.7586 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5294 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6351 | 1704 | 0 | 1704 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 45.1539 | 481 | 0 | 481 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.6757 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.7436 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6825 | 7 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9865 | 10 | 0 | 10 | 0 | 0 | ||