PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20401-20450 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.4336 | 95.2855 | 99.6808 | 39.8879 | 19625 | 971 | 19673 | 63 | 52 | 82.5397 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.4331 | 98.7825 | 96.1201 | 76.9651 | 4706 | 58 | 4707 | 190 | 22 | 11.5789 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4329 | 96.3492 | 98.5413 | 62.2630 | 607 | 23 | 608 | 9 | 8 | 88.8889 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4327 | 99.6801 | 95.2844 | 41.6647 | 4674 | 15 | 4708 | 233 | 3 | 1.2876 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.4326 | 95.5919 | 99.3455 | 89.4983 | 759 | 35 | 759 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | homalt | 97.4326 | 95.8716 | 99.0453 | 92.4843 | 418 | 18 | 415 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.4321 | 98.7143 | 96.1827 | 78.0708 | 16277 | 212 | 16277 | 646 | 117 | 18.1115 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4316 | 96.3170 | 98.5722 | 66.0922 | 1726 | 66 | 1726 | 25 | 17 | 68.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.4314 | 95.4545 | 99.4920 | 57.5943 | 1176 | 56 | 1175 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 98.7964 | 96.1027 | 79.7737 | 10671 | 130 | 10702 | 434 | 19 | 4.3779 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 96.6068 | 98.2694 | 64.7012 | 3929 | 138 | 3918 | 69 | 61 | 88.4058 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m0_e0 | het | 97.4302 | 95.2129 | 99.7533 | 66.6849 | 4853 | 244 | 4853 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.4301 | 97.2854 | 97.5753 | 76.8498 | 1326 | 37 | 1328 | 33 | 32 | 96.9697 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | * | 97.4296 | 96.9290 | 97.9355 | 98.6839 | 1515 | 48 | 1518 | 32 | 12 | 37.5000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | het | 97.4295 | 96.8040 | 98.0631 | 86.2674 | 1363 | 45 | 1367 | 27 | 3 | 11.1111 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.4288 | 95.8621 | 99.0476 | 82.9442 | 834 | 36 | 832 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.4281 | 96.1083 | 98.7847 | 80.3413 | 568 | 23 | 569 | 7 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4281 | 99.0035 | 95.9022 | 49.9948 | 4570 | 46 | 4587 | 196 | 1 | 0.5102 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4277 | 95.1629 | 99.8030 | 47.8149 | 964 | 49 | 1013 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4274 | 95.1629 | 99.8024 | 48.6555 | 964 | 49 | 1010 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | het | 97.4268 | 95.9790 | 98.9189 | 91.9902 | 549 | 23 | 549 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4267 | 96.6141 | 98.2531 | 76.5682 | 2083 | 73 | 2081 | 37 | 19 | 51.3514 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4266 | 99.5114 | 95.4273 | 42.4504 | 5092 | 25 | 5092 | 244 | 244 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | * | 97.4261 | 95.7377 | 99.1752 | 91.7964 | 2044 | 91 | 2044 | 17 | 8 | 47.0588 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4259 | 97.9953 | 96.8630 | 51.4454 | 4595 | 94 | 4539 | 147 | 42 | 28.5714 | |
| hfeng-pmm2 | SNP | * | map_l250_m0_e0 | het | 97.4257 | 98.0080 | 96.8504 | 93.8031 | 1476 | 30 | 1476 | 48 | 4 | 8.3333 | |
| egarrison-hhga | INDEL | * | * | * | 97.4253 | 97.1646 | 97.6874 | 75.7607 | 334773 | 9769 | 335276 | 7937 | 6682 | 84.1880 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.4250 | 96.3768 | 98.4962 | 90.6073 | 266 | 10 | 262 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4247 | 97.1193 | 97.7320 | 84.0145 | 472 | 14 | 474 | 11 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.4245 | 96.5596 | 98.3051 | 85.6945 | 421 | 15 | 406 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4236 | 97.9239 | 96.9283 | 92.3837 | 283 | 6 | 284 | 9 | 1 | 11.1111 | |
| ckim-dragen | SNP | tv | segdup | het | 97.4236 | 99.7730 | 95.1822 | 94.3912 | 5275 | 12 | 5275 | 267 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.4235 | 97.0785 | 97.7709 | 66.8650 | 1595 | 48 | 1579 | 36 | 31 | 86.1111 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4229 | 96.3710 | 98.4980 | 52.1860 | 30831 | 1161 | 30755 | 469 | 455 | 97.0149 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4225 | 97.6048 | 97.2409 | 55.7572 | 1304 | 32 | 1304 | 37 | 14 | 37.8378 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4218 | 98.7654 | 96.1142 | 48.1999 | 7360 | 92 | 7371 | 298 | 81 | 27.1812 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | * | 97.4217 | 95.4963 | 99.4264 | 79.7601 | 1039 | 49 | 1040 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | het | 97.4217 | 98.6269 | 96.2456 | 76.6277 | 13791 | 192 | 13792 | 538 | 130 | 24.1636 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4215 | 95.7225 | 99.1819 | 60.8518 | 5684 | 254 | 5698 | 47 | 44 | 93.6170 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4207 | 96.0961 | 98.7822 | 82.8691 | 640 | 26 | 1379 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4207 | 96.0961 | 98.7822 | 82.8691 | 640 | 26 | 1379 | 17 | 10 | 58.8235 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.4206 | 97.7525 | 97.0909 | 66.2577 | 3175 | 73 | 3204 | 96 | 3 | 3.1250 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.4204 | 95.5696 | 99.3443 | 73.5702 | 302 | 14 | 303 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4203 | 98.9214 | 95.9641 | 68.3987 | 642 | 7 | 642 | 27 | 27 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m0_e0 | * | 97.4197 | 98.0724 | 96.7757 | 78.9680 | 12516 | 246 | 12516 | 417 | 104 | 24.9400 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | * | 97.4196 | 98.2993 | 96.5556 | 89.6718 | 867 | 15 | 869 | 31 | 6 | 19.3548 | |