PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18651-18700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | homalt | 97.8366 | 95.9679 | 99.7796 | 68.5265 | 10996 | 462 | 10863 | 24 | 19 | 79.1667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8366 | 97.9003 | 97.7730 | 86.6718 | 1119 | 24 | 1361 | 31 | 16 | 51.6129 | |
| rpoplin-dv42 | SNP | ti | map_l250_m0_e0 | * | 97.8365 | 97.3723 | 98.3051 | 92.1397 | 1334 | 36 | 1334 | 23 | 13 | 56.5217 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.8361 | 97.9984 | 97.6744 | 63.8236 | 1224 | 25 | 1218 | 29 | 25 | 86.2069 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.8361 | 97.9984 | 97.6744 | 63.8236 | 1224 | 25 | 1218 | 29 | 25 | 86.2069 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8360 | 99.8663 | 95.8865 | 61.2690 | 20172 | 27 | 20210 | 867 | 535 | 61.7070 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 95.2692 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 95.3432 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 95.2243 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 94.1971 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.9227 | 113 | 3 | 113 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8334 | 96.0100 | 99.7275 | 78.6876 | 385 | 16 | 366 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | het | 97.8332 | 99.1530 | 96.5480 | 75.0125 | 46006 | 393 | 46009 | 1645 | 255 | 15.5015 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8331 | 99.2999 | 96.4089 | 78.7770 | 28511 | 201 | 28511 | 1062 | 52 | 4.8964 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8331 | 99.2999 | 96.4089 | 78.7770 | 28511 | 201 | 28511 | 1062 | 52 | 4.8964 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8328 | 99.0038 | 96.6891 | 76.0765 | 3876 | 39 | 3884 | 133 | 2 | 1.5038 | |
| anovak-vg | SNP | ti | segdup | * | 97.8325 | 97.8809 | 97.7842 | 91.7442 | 19123 | 414 | 19020 | 431 | 163 | 37.8190 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8322 | 98.8294 | 96.8550 | 70.8320 | 6163 | 73 | 6190 | 201 | 20 | 9.9503 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | homalt | 97.8321 | 96.2134 | 99.5062 | 78.2651 | 5844 | 230 | 5844 | 29 | 7 | 24.1379 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8320 | 96.0887 | 99.6397 | 60.4528 | 14814 | 603 | 14932 | 54 | 53 | 98.1481 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | homalt | 97.8308 | 96.2647 | 99.4487 | 89.6177 | 902 | 35 | 902 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8307 | 96.4864 | 99.2129 | 59.5573 | 8101 | 295 | 8067 | 64 | 55 | 85.9375 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.8305 | 99.0421 | 96.6480 | 89.9495 | 517 | 5 | 519 | 18 | 3 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8298 | 96.1383 | 99.5819 | 26.2302 | 5228 | 210 | 5240 | 22 | 22 | 100.0000 | |
| hfeng-pmm1 | SNP | * | HG002compoundhet | * | 97.8294 | 95.8214 | 99.9233 | 39.2517 | 24743 | 1079 | 24742 | 19 | 15 | 78.9474 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8292 | 97.6879 | 97.9710 | 69.1137 | 338 | 8 | 338 | 7 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8292 | 97.9710 | 97.6879 | 87.4501 | 338 | 7 | 338 | 8 | 1 | 12.5000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.8291 | 97.6589 | 98.0000 | 90.4943 | 292 | 7 | 294 | 6 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | het | 97.8290 | 96.6258 | 99.0625 | 85.1232 | 315 | 11 | 317 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8288 | 98.4539 | 97.2116 | 67.2453 | 14391 | 226 | 14015 | 402 | 380 | 94.5274 | |
| hfeng-pmm3 | SNP | * | HG002compoundhet | * | 97.8284 | 95.8679 | 99.8709 | 39.6499 | 24755 | 1067 | 24755 | 32 | 15 | 46.8750 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.8280 | 96.1240 | 99.5935 | 81.4199 | 248 | 10 | 245 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_siren | * | 97.8278 | 98.7022 | 96.9687 | 83.0880 | 2966 | 39 | 2975 | 93 | 10 | 10.7527 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8277 | 99.0358 | 96.6488 | 86.8244 | 719 | 7 | 721 | 25 | 2 | 8.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8277 | 100.0000 | 95.7478 | 73.3906 | 653 | 0 | 653 | 29 | 28 | 96.5517 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8276 | 97.3501 | 98.3099 | 87.6436 | 698 | 19 | 698 | 12 | 5 | 41.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8275 | 97.5066 | 98.1506 | 66.5044 | 743 | 19 | 743 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | * | 97.8272 | 97.9257 | 97.7289 | 86.7675 | 1133 | 24 | 1377 | 32 | 17 | 53.1250 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8272 | 95.9868 | 99.7397 | 74.0574 | 2320 | 97 | 2299 | 6 | 4 | 66.6667 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.8272 | 96.2865 | 99.4180 | 65.5827 | 2904 | 112 | 2904 | 17 | 1 | 5.8824 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8271 | 98.5380 | 97.1264 | 88.2650 | 1348 | 20 | 1352 | 40 | 5 | 12.5000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | * | 97.8266 | 97.4959 | 98.1596 | 89.9363 | 7787 | 200 | 7787 | 146 | 39 | 26.7123 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e0 | homalt | 97.8264 | 95.9500 | 99.7776 | 68.4862 | 10898 | 460 | 10766 | 24 | 19 | 79.1667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 91.1417 | 45 | 2 | 45 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | het | 97.8261 | 95.7447 | 100.0000 | 91.0180 | 45 | 2 | 45 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.8330 | 45 | 2 | 45 | 0 | 0 | ||