PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17301-17350 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9710 | 106 | 4 | 106 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 91.0017 | 106 | 4 | 106 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9091 | 106 | 4 | 106 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9633 | 106 | 4 | 106 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | func_cds | * | 98.1481 | 100.0000 | 96.3636 | 44.8161 | 159 | 0 | 159 | 6 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9710 | 106 | 4 | 106 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1481 | 97.3753 | 98.9333 | 63.7506 | 742 | 20 | 742 | 8 | 4 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.1478 | 98.2188 | 98.0769 | 60.6061 | 772 | 14 | 765 | 15 | 10 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1477 | 97.9424 | 98.3539 | 86.9705 | 476 | 10 | 478 | 8 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | * | 98.1475 | 98.1139 | 98.1812 | 90.2264 | 2861 | 55 | 2861 | 53 | 12 | 22.6415 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | homalt | 98.1474 | 96.6493 | 99.6928 | 88.8202 | 2596 | 90 | 2596 | 8 | 4 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | * | 98.1470 | 97.2454 | 99.0654 | 57.0085 | 4660 | 132 | 4664 | 44 | 43 | 97.7273 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.1461 | 97.4026 | 98.9011 | 86.8269 | 450 | 12 | 450 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1456 | 99.7794 | 96.5643 | 55.8438 | 9500 | 21 | 9500 | 338 | 334 | 98.8166 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1456 | 97.0290 | 99.2882 | 49.3199 | 17146 | 525 | 17018 | 122 | 80 | 65.5738 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1456 | 97.0290 | 99.2882 | 49.3199 | 17146 | 525 | 17018 | 122 | 80 | 65.5738 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1453 | 97.1129 | 99.2000 | 58.1707 | 740 | 22 | 744 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 98.1450 | 98.4772 | 97.8151 | 83.8007 | 582 | 9 | 582 | 13 | 3 | 23.0769 | |
| hfeng-pmm1 | INDEL | I6_15 | * | homalt | 98.1442 | 99.5993 | 96.7310 | 48.9389 | 6214 | 25 | 6214 | 210 | 209 | 99.5238 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 98.1438 | 98.0157 | 98.2723 | 83.6389 | 1877 | 38 | 1877 | 33 | 12 | 36.3636 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1429 | 97.6886 | 98.6014 | 32.5284 | 7185 | 170 | 7191 | 102 | 76 | 74.5098 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | het | 98.1428 | 98.2370 | 98.0488 | 85.0974 | 1003 | 18 | 1005 | 20 | 2 | 10.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | het | 98.1424 | 96.5605 | 99.7771 | 58.4090 | 2274 | 81 | 2238 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | het | 98.1424 | 98.3528 | 97.9328 | 87.3523 | 2269 | 38 | 2274 | 48 | 10 | 20.8333 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1423 | 98.9601 | 97.3379 | 67.2353 | 14465 | 152 | 14077 | 385 | 358 | 92.9870 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.1413 | 97.5124 | 98.7784 | 72.7143 | 588 | 15 | 566 | 7 | 4 | 57.1429 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1412 | 97.5428 | 98.7469 | 41.4519 | 23937 | 603 | 23956 | 304 | 264 | 86.8421 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1407 | 99.3309 | 96.9788 | 67.1842 | 35182 | 237 | 35277 | 1099 | 205 | 18.6533 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1406 | 96.7672 | 99.5536 | 71.0407 | 449 | 15 | 446 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1406 | 96.7672 | 99.5536 | 69.6682 | 449 | 15 | 446 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1399 | 97.6669 | 98.6176 | 47.8517 | 17833 | 426 | 17834 | 250 | 247 | 98.8000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1392 | 98.8202 | 97.4675 | 78.5775 | 4188 | 50 | 4195 | 109 | 1 | 0.9174 | |
| jmaeng-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.1392 | 99.9176 | 96.4229 | 55.6886 | 1213 | 1 | 1213 | 45 | 45 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.1391 | 98.4283 | 97.8516 | 85.3798 | 501 | 8 | 501 | 11 | 5 | 45.4545 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1383 | 96.3446 | 100.0000 | 78.0038 | 369 | 14 | 346 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1375 | 97.9385 | 98.3373 | 54.7451 | 2898 | 61 | 2898 | 49 | 23 | 46.9388 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1374 | 97.6583 | 98.6213 | 37.9185 | 2669 | 64 | 8083 | 113 | 105 | 92.9204 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1373 | 96.5517 | 99.7758 | 69.8852 | 448 | 16 | 445 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1373 | 96.5750 | 99.7509 | 81.8576 | 4004 | 142 | 4004 | 10 | 3 | 30.0000 | |
| ckim-isaac | SNP | * | segdup | homalt | 98.1370 | 96.3511 | 99.9903 | 85.3967 | 10351 | 392 | 10351 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | HG002complexvar | * | 98.1368 | 97.0653 | 99.2323 | 22.0366 | 238931 | 7224 | 238861 | 1848 | 1739 | 94.1017 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1366 | 96.3415 | 100.0000 | 89.8718 | 79 | 3 | 79 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.0000 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |