PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17201-17250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 91.1923 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | het | 98.1705 | 96.5771 | 99.8173 | 61.6528 | 19666 | 697 | 19666 | 36 | 2 | 5.5556 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1705 | 99.5602 | 96.8190 | 57.4112 | 3622 | 16 | 3622 | 119 | 117 | 98.3193 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1703 | 98.2906 | 98.0503 | 64.7824 | 4370 | 76 | 4325 | 86 | 81 | 94.1860 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | homalt | 98.1703 | 96.7255 | 99.6588 | 90.0637 | 2629 | 89 | 2629 | 9 | 5 | 55.5556 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1693 | 98.6207 | 97.7221 | 69.8074 | 429 | 6 | 429 | 10 | 4 | 40.0000 | |
| asubramanian-gatk | SNP | ti | HG002compoundhet | * | 98.1691 | 96.6358 | 99.7519 | 35.8566 | 16890 | 588 | 16888 | 42 | 17 | 40.4762 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | * | 98.1690 | 98.0164 | 98.3220 | 81.5743 | 3459 | 70 | 3457 | 59 | 15 | 25.4237 | |
| jmaeng-gatk | SNP | tv | segdup | * | 98.1687 | 99.3085 | 97.0548 | 94.6921 | 8473 | 59 | 8469 | 257 | 8 | 3.1128 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1685 | 99.1166 | 97.2384 | 51.9217 | 11332 | 101 | 11373 | 323 | 59 | 18.2663 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | het | 98.1685 | 97.4818 | 98.8649 | 87.9315 | 1742 | 45 | 1742 | 20 | 2 | 10.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | het | 98.1681 | 99.0582 | 97.2939 | 72.4309 | 29660 | 282 | 29662 | 825 | 157 | 19.0303 | |
| jli-custom | SNP | * | map_l250_m1_e0 | * | 98.1678 | 97.1891 | 99.1664 | 85.6613 | 7019 | 203 | 7019 | 59 | 29 | 49.1525 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | homalt | 98.1672 | 97.0794 | 99.2797 | 87.2766 | 831 | 25 | 827 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | SNP | * | segdup | * | 98.1671 | 99.2090 | 97.1467 | 91.9113 | 27845 | 222 | 27851 | 818 | 71 | 8.6797 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | homalt | 98.1670 | 96.4551 | 99.9407 | 84.8332 | 1687 | 62 | 1686 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.1661 | 96.3983 | 100.0000 | 32.3751 | 910 | 34 | 988 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.1661 | 96.3983 | 100.0000 | 32.2115 | 910 | 34 | 987 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | HG002complexvar | homalt | 98.1658 | 96.5628 | 99.8230 | 18.7873 | 278656 | 9919 | 269038 | 477 | 269 | 56.3941 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1652 | 97.0888 | 99.2658 | 70.8788 | 1334 | 40 | 1352 | 10 | 10 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 94.2144 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | homalt | 98.1651 | 98.1707 | 98.1595 | 90.6697 | 161 | 3 | 160 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 95.2464 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | het | 98.1651 | 98.1595 | 98.1707 | 86.4351 | 320 | 6 | 322 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1647 | 97.6017 | 98.7342 | 72.8055 | 936 | 23 | 936 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 98.1641 | 97.2350 | 99.1111 | 53.7037 | 211 | 6 | 223 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1641 | 99.7099 | 96.6655 | 41.7144 | 2750 | 8 | 2754 | 95 | 83 | 87.3684 | |
| asubramanian-gatk | SNP | tv | segdup | homalt | 98.1636 | 96.5720 | 99.8085 | 89.8001 | 3127 | 111 | 3127 | 6 | 6 | 100.0000 | |
| mlin-fermikit | SNP | * | HG002complexvar | het | 98.1632 | 96.4217 | 99.9688 | 17.2653 | 448843 | 16657 | 448744 | 140 | 23 | 16.4286 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | het | 98.1632 | 99.0762 | 97.2668 | 74.0488 | 30674 | 286 | 30676 | 862 | 158 | 18.3295 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | het | 98.1627 | 97.3958 | 98.9418 | 89.2062 | 187 | 5 | 187 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.1627 | 97.3958 | 98.9418 | 36.7893 | 187 | 5 | 187 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m1_e0 | het | 98.1622 | 96.5077 | 99.8745 | 59.1812 | 11938 | 432 | 11940 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | homalt | 98.1620 | 96.4447 | 99.9415 | 84.8962 | 1709 | 63 | 1708 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | het | 98.1612 | 98.9218 | 97.4121 | 90.4001 | 2936 | 32 | 2936 | 78 | 16 | 20.5128 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1609 | 98.4416 | 97.8818 | 85.3694 | 758 | 12 | 878 | 19 | 6 | 31.5789 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1602 | 97.5584 | 98.7696 | 74.5081 | 919 | 23 | 883 | 11 | 5 | 45.4545 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1602 | 97.5584 | 98.7696 | 74.4425 | 919 | 23 | 883 | 11 | 5 | 45.4545 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1601 | 96.8618 | 99.4937 | 40.9343 | 17686 | 573 | 17687 | 90 | 86 | 95.5556 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1595 | 97.5610 | 98.7654 | 93.1414 | 80 | 2 | 80 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.1595 | 97.5610 | 98.7654 | 88.0266 | 480 | 12 | 480 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | het | 98.1591 | 98.7359 | 97.5891 | 74.7511 | 9998 | 128 | 9998 | 247 | 44 | 17.8138 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | homalt | 98.1582 | 98.0519 | 98.2646 | 89.3558 | 453 | 9 | 453 | 8 | 6 | 75.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.1579 | 99.2021 | 97.1354 | 67.6223 | 1119 | 9 | 1119 | 33 | 3 | 9.0909 | |
| jli-custom | INDEL | * | map_l150_m2_e1 | het | 98.1579 | 97.9437 | 98.3731 | 89.4713 | 905 | 19 | 907 | 15 | 4 | 26.6667 | |
| gduggal-bwafb | SNP | tv | segdup | het | 98.1577 | 99.2623 | 97.0773 | 93.8623 | 5248 | 39 | 5248 | 158 | 6 | 3.7975 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | het | 98.1575 | 97.9933 | 98.3221 | 89.8398 | 293 | 6 | 293 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1564 | 96.8697 | 99.4778 | 38.9804 | 1145 | 37 | 1143 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | * | 98.1563 | 97.8161 | 98.4988 | 85.2244 | 851 | 19 | 853 | 13 | 1 | 7.6923 | |