PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
14801-14850 / 86044 show all
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
98.6680
98.1203
99.2218
79.3408
261525521
50.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6674
99.8437
97.5186
50.9181
510985109130129
99.2308
jli-customINDELD1_5map_l100_m2_e0*
98.6673
98.5379
98.7971
83.0195
1887281889238
34.7826
jli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
98.6673
97.7687
99.5826
65.8986
3812873817169
56.2500
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6672
99.9578
97.4095
54.3286
2369123696362
98.4127
hfeng-pmm1SNPtimap_l250_m1_e0het
98.6671
98.5175
98.8172
88.8014
2924442924358
22.8571
bgallagher-sentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6669
97.8687
99.4782
72.3688
15245332152528064
80.0000
ltrigg-rtg1INDELI1_5map_l125_m0_e0homalt
98.6667
100.0000
97.3684
84.9604
114011131
33.3333
jmaeng-gatkINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
98.6667
100.0000
97.3684
80.0000
3703710
0.0000
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.6667
100.0000
97.3684
62.2901
4810481138
61.5385
hfeng-pmm1INDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
98.6667
100.0000
97.3684
76.9697
3703710
0.0000
hfeng-pmm2INDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
98.6667
100.0000
97.3684
77.6471
3703710
0.0000
jlack-gatkINDELD6_15map_l125_m2_e1homalt
98.6667
100.0000
97.3684
87.5000
3703711
100.0000
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
98.6667
100.0000
97.3684
76.3975
3703710
0.0000
hfeng-pmm3INDEL*tech_badpromoters*
98.6667
97.3684
100.0000
53.4591
7427400
bgallagher-sentieonSNPtimap_l250_m2_e0*
98.6664
98.9816
98.3532
89.5470
49575149578319
22.8916
gduggal-bwafbSNP*map_l150_m2_e1*
98.6663
98.6464
98.6862
78.1729
3177443631774423108
25.5319
cchapple-customINDELI1_5map_l125_m2_e0homalt
98.6662
97.9472
99.3958
83.2320
334732921
50.0000
ndellapenna-hhgaSNP*map_l150_m2_e1het
98.6659
97.6968
99.6544
74.7044
19894469198946930
43.4783
gduggal-bwafbSNPtvmap_l125_m2_e0*
98.6658
98.8902
98.4424
74.7627
163061831630625851
19.7674
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.6655
98.1110
99.2262
52.5551
1449127914491113109
96.4602
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6653
98.1228
99.2138
75.9182
1934371893157
46.6667
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6653
98.1228
99.2138
75.9182
1934371893157
46.6667
gduggal-bwavardSNP*map_l125_m2_e0homalt
98.6652
97.4964
99.8623
68.6081
16940435166852318
78.2609
gduggal-bwavardSNP*segduphomalt
98.6646
97.8125
99.5315
88.9251
10508235104114947
95.9184
bgallagher-sentieonSNPtimap_l250_m2_e1*
98.6646
98.9756
98.3555
89.6132
50245250248419
22.6190
ltrigg-rtg1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6644
98.0498
99.2867
71.5861
59831195985437
16.2791
ndellapenna-hhgaSNPtimap_l150_m1_e0het
98.6644
97.6395
99.7111
73.7513
12078292120783517
48.5714
ckim-dragenSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.6641
98.6641
98.6641
63.0726
517751770
0.0000
ckim-dragenSNP*map_l100_m2_e0*
98.6634
99.2943
98.0406
69.7855
73442522734531468152
10.3542
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.6633
97.6712
99.6756
43.8460
213951215176
85.7143
cchapple-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.6628
98.4043
98.9228
61.2656
555955166
100.0000
jli-customINDELD1_5map_l100_m2_e1het
98.6620
98.8170
98.5075
82.6685
1253151254195
26.3158
ckim-vqsrSNP*HG002compoundhethomalt
98.6617
97.4309
99.9239
35.4419
105052771050487
87.5000
egarrison-hhgaSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.6616
98.4733
98.8506
65.3846
516851665
83.3333
ghariani-varprowlSNPtvmap_l150_m1_e0homalt
98.6612
98.0487
99.2815
73.6565
38697738692815
53.5714
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6606
99.5951
97.7434
43.6301
5658235631130122
93.8462
ndellapenna-hhgaSNP*map_l150_m2_e0het
98.6606
97.6854
99.6554
74.6307
19667466196676830
44.1176
jli-customINDELD1_5map_l125_m2_e1*
98.6603
98.6171
98.7035
86.0971
1141161142155
33.3333
ltrigg-rtg2INDEL*map_l100_m2_e1homalt
98.6597
97.6581
99.6820
78.7966
125130125442
50.0000
cchapple-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.6596
99.6701
97.6694
53.9900
36261236048685
98.8372
eyeh-varpipeINDELI1_5map_l125_m2_e1homalt
98.6596
99.1254
98.1982
85.1326
3403545109
90.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0het
98.6590
97.7984
99.5349
67.9349
706315970633313
39.3939
jlack-gatkSNPtvmap_l250_m2_e0homalt
98.6581
98.0790
99.2441
87.2434
9191891975
71.4286
rpoplin-dv42INDELD1_5map_l125_m0_e0homalt
98.6577
99.3243
98.0000
87.4896
147114733
100.0000
ckim-dragenSNPtvmap_l100_m1_e0*
98.6576
99.2817
98.0414
69.3325
243251762432848645
9.2593
jli-customINDELD1_5map_l100_m2_e1*
98.6576
98.5044
98.8114
83.1328
1910291912238
34.7826
gduggal-bwafbSNP*map_l150_m2_e0*
98.6575
98.6343
98.6808
78.1008
3141743531417420107
25.4762
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727