PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14401-14450 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7368 | 97.5052 | 100.0000 | 47.4691 | 469 | 12 | 467 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7368 | 98.6330 | 98.8409 | 85.1301 | 938 | 13 | 938 | 11 | 4 | 36.3636 | |
| gduggal-snapplat | SNP | tv | segdup | * | 98.7367 | 98.4294 | 99.0458 | 94.5607 | 8398 | 134 | 8408 | 81 | 13 | 16.0494 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 98.7364 | 98.3607 | 99.1150 | 86.3291 | 780 | 13 | 784 | 7 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7364 | 98.6591 | 98.8138 | 83.7031 | 1913 | 26 | 1916 | 23 | 9 | 39.1304 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7362 | 97.5039 | 100.0000 | 43.6266 | 625 | 16 | 628 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m2_e1 | homalt | 98.7359 | 97.5104 | 99.9926 | 58.6714 | 27104 | 692 | 27093 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7353 | 98.9667 | 98.5050 | 75.1773 | 2969 | 31 | 2965 | 45 | 33 | 73.3333 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | het | 98.7345 | 97.7868 | 99.7007 | 62.3395 | 28984 | 656 | 28985 | 87 | 12 | 13.7931 | |
| ltrigg-rtg1 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 43.6620 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.5055 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7342 | 98.6747 | 98.7937 | 86.0391 | 819 | 11 | 819 | 10 | 2 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.7342 | 98.6207 | 98.8479 | 87.4221 | 858 | 12 | 858 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.3583 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.2775 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | segdup | homalt | 98.7340 | 98.8882 | 98.5802 | 89.2441 | 3202 | 36 | 3194 | 46 | 38 | 82.6087 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.7338 | 98.0695 | 99.4071 | 79.0129 | 508 | 10 | 503 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | segdup | het | 98.7337 | 99.4597 | 98.0182 | 87.1794 | 11965 | 65 | 11969 | 242 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7336 | 98.3871 | 99.0826 | 83.5347 | 61 | 1 | 108 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |
| gduggal-bwafb | SNP | tv | map_siren | het | 98.7335 | 99.3254 | 98.1487 | 63.6405 | 28416 | 193 | 28416 | 536 | 69 | 12.8731 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7335 | 99.7729 | 97.7156 | 45.5716 | 8347 | 19 | 8341 | 195 | 193 | 98.9744 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7334 | 99.1228 | 98.3471 | 87.3629 | 113 | 1 | 238 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | * | 98.7333 | 97.8816 | 99.6000 | 88.1610 | 4482 | 97 | 4482 | 18 | 8 | 44.4444 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7332 | 99.6556 | 97.8277 | 50.1744 | 4051 | 14 | 4053 | 90 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7329 | 97.9988 | 99.4780 | 65.5490 | 3183 | 65 | 3240 | 17 | 5 | 29.4118 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.7326 | 98.1084 | 99.3647 | 83.4872 | 778 | 15 | 782 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | * | het | 98.7325 | 97.5284 | 99.9667 | 15.6908 | 1250214 | 31683 | 1250525 | 417 | 31 | 7.4341 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m1_e0 | * | 98.7324 | 97.6004 | 99.8910 | 62.9401 | 19239 | 473 | 19242 | 21 | 7 | 33.3333 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | * | 98.7318 | 97.7074 | 99.7779 | 38.3623 | 25230 | 592 | 25160 | 56 | 17 | 30.3571 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | het | 98.7318 | 97.7485 | 99.7352 | 62.6803 | 18451 | 425 | 18453 | 49 | 7 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7317 | 98.3139 | 99.1531 | 74.1059 | 1516 | 26 | 1522 | 13 | 2 | 15.3846 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | homalt | 98.7307 | 97.5003 | 99.9925 | 58.6733 | 26835 | 688 | 26824 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7300 | 99.5308 | 97.9420 | 44.2389 | 4667 | 22 | 4664 | 98 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | map_l150_m0_e0 | het | 98.7297 | 97.8841 | 99.5900 | 80.6088 | 7772 | 168 | 7772 | 32 | 11 | 34.3750 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7294 | 97.9480 | 99.5234 | 39.3399 | 5012 | 105 | 5012 | 24 | 23 | 95.8333 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7292 | 99.2141 | 98.2490 | 85.0971 | 505 | 4 | 505 | 9 | 5 | 55.5556 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7291 | 97.9738 | 99.4961 | 65.8453 | 3820 | 79 | 4344 | 22 | 13 | 59.0909 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7289 | 99.8064 | 97.6744 | 57.4974 | 5670 | 11 | 5670 | 135 | 133 | 98.5185 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7284 | 99.9156 | 97.5690 | 55.8647 | 2368 | 2 | 2368 | 59 | 57 | 96.6102 | |
| dgrover-gatk | SNP | ti | map_l250_m0_e0 | homalt | 98.7283 | 97.9358 | 99.5338 | 91.1982 | 427 | 9 | 427 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | ti | map_siren | * | 98.7281 | 98.3847 | 99.0739 | 58.8371 | 98734 | 1621 | 98737 | 923 | 255 | 27.6273 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | homalt | 98.7279 | 97.8388 | 99.6332 | 70.1233 | 2173 | 48 | 2173 | 8 | 5 | 62.5000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7277 | 98.8115 | 98.6441 | 72.5709 | 1164 | 14 | 1164 | 16 | 16 | 100.0000 | |