PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12551-12600 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | het | 99.0398 | 99.3285 | 98.7528 | 76.5217 | 10058 | 68 | 10056 | 127 | 22 | 17.3228 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0398 | 98.5800 | 99.5039 | 51.7553 | 1805 | 26 | 1805 | 9 | 1 | 11.1111 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | * | 99.0394 | 98.8947 | 99.1845 | 66.6640 | 32478 | 363 | 32474 | 267 | 146 | 54.6816 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0393 | 99.2995 | 98.7805 | 65.9953 | 567 | 4 | 567 | 7 | 7 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0389 | 98.3049 | 99.7840 | 74.1160 | 14324 | 247 | 14324 | 31 | 7 | 22.5806 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0389 | 98.3049 | 99.7840 | 74.1160 | 14324 | 247 | 14324 | 31 | 7 | 22.5806 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.2550 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 69.9140 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | SNP | ti | HG002complexvar | hetalt | 99.0385 | 99.5169 | 98.5646 | 34.6875 | 206 | 1 | 206 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.7521 | 309 | 0 | 309 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.1139 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0385 | 100.0000 | 98.0952 | 76.5101 | 5 | 0 | 103 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | het | 99.0385 | 99.6286 | 98.4553 | 71.2000 | 30845 | 115 | 30148 | 473 | 19 | 4.0169 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0381 | 99.3603 | 98.7179 | 86.0756 | 466 | 3 | 462 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | * | 99.0376 | 99.4409 | 98.6375 | 90.5192 | 4980 | 28 | 4923 | 68 | 6 | 8.8235 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | het | 99.0369 | 98.4154 | 99.6662 | 64.6823 | 15527 | 250 | 15527 | 52 | 17 | 32.6923 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0369 | 98.7990 | 99.2759 | 70.2133 | 1234 | 15 | 1234 | 9 | 4 | 44.4444 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0369 | 98.7990 | 99.2759 | 70.2133 | 1234 | 15 | 1234 | 9 | 4 | 44.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0366 | 99.6124 | 98.4674 | 83.9975 | 257 | 1 | 257 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0366 | 99.3834 | 98.6923 | 64.9734 | 55288 | 343 | 55243 | 732 | 105 | 14.3443 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | * | 99.0365 | 98.2955 | 99.7888 | 72.3511 | 19376 | 336 | 19376 | 41 | 23 | 56.0976 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0365 | 99.1497 | 98.9235 | 87.9760 | 1749 | 15 | 1746 | 19 | 14 | 73.6842 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0364 | 98.8318 | 99.2419 | 76.8770 | 6345 | 75 | 6284 | 48 | 25 | 52.0833 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0364 | 98.8318 | 99.2419 | 76.8770 | 6345 | 75 | 6284 | 48 | 25 | 52.0833 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0359 | 98.7072 | 99.3669 | 75.4765 | 6337 | 83 | 6278 | 40 | 26 | 65.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0359 | 98.7072 | 99.3669 | 75.4765 | 6337 | 83 | 6278 | 40 | 26 | 65.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | * | 99.0356 | 98.3329 | 99.7484 | 73.8523 | 31321 | 531 | 31321 | 79 | 40 | 50.6329 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | * | 99.0356 | 99.1356 | 98.9358 | 69.1822 | 74091 | 646 | 74093 | 797 | 164 | 20.5772 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0356 | 98.2979 | 99.7845 | 67.5978 | 462 | 8 | 463 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | het | 99.0356 | 98.4142 | 99.6649 | 74.5802 | 7137 | 115 | 7137 | 24 | 9 | 37.5000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0355 | 98.4951 | 99.5819 | 70.6787 | 2618 | 40 | 2620 | 11 | 3 | 27.2727 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0354 | 98.0892 | 100.0000 | 53.7037 | 154 | 3 | 150 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0354 | 98.0892 | 100.0000 | 53.5604 | 154 | 3 | 150 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0354 | 98.5075 | 99.5690 | 83.8609 | 462 | 7 | 462 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0354 | 98.2979 | 99.7840 | 66.4006 | 462 | 8 | 462 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0352 | 98.3306 | 99.7499 | 54.7881 | 17553 | 298 | 17552 | 44 | 4 | 9.0909 | |
| jli-custom | INDEL | D6_15 | * | het | 99.0350 | 98.8958 | 99.1747 | 58.3418 | 11464 | 128 | 11416 | 95 | 84 | 88.4211 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0349 | 98.5054 | 99.5702 | 72.8907 | 63468 | 963 | 63480 | 274 | 249 | 90.8759 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0344 | 98.9969 | 99.0719 | 86.7371 | 1283 | 13 | 1281 | 12 | 9 | 75.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0343 | 98.3940 | 99.6831 | 76.6868 | 6004 | 98 | 5976 | 19 | 10 | 52.6316 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0342 | 98.2942 | 99.7854 | 85.3275 | 461 | 8 | 465 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0342 | 98.7654 | 99.3045 | 87.2122 | 1280 | 16 | 1285 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0341 | 98.8095 | 99.2597 | 89.1343 | 1743 | 21 | 1743 | 13 | 10 | 76.9231 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | het | 99.0340 | 98.4126 | 99.6632 | 64.7264 | 15685 | 253 | 15685 | 53 | 17 | 32.0755 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0338 | 98.2985 | 99.7802 | 60.1845 | 10919 | 189 | 10893 | 24 | 6 | 25.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | * | 99.0337 | 98.9362 | 99.1315 | 88.6771 | 5022 | 54 | 5022 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0336 | 98.8971 | 99.1705 | 63.1579 | 1076 | 12 | 1076 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0333 | 99.7835 | 98.2942 | 63.8675 | 461 | 1 | 461 | 8 | 8 | 100.0000 | |