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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 244 245 246 247 248 249 250 251 252 ... 1720 1721 » 12351-12400 / 86044 show all
dgrover-gatk	SNP	tv	map_l125_m2_e1	het	99.0786	99.3556	98.8030	77.7194	10485	68	10483	127	22	17.3228
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0782	98.7966	99.3614	79.3181	4187	51	4201	27	8	29.6296
bgallagher-sentieon	INDEL	I1_5	map_siren	het	99.0779	98.9292	99.2271	81.4696	1663	18	1669	13	1	7.6923
rpoplin-dv42	SNP	*	map_l150_m2_e1	*	99.0777	98.8916	99.2644	75.0455	31853	357	31847	236	152	64.4068
jli-custom	SNP	tv	map_l100_m0_e0	*	99.0774	98.8271	99.3290	64.5356	10954	130	10954	74	25	33.7838
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0769	99.9113	98.2563	59.2395	1127	1	1127	20	10	50.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0767	99.3951	98.7603	83.0758	2629	16	2629	33	6	18.1818
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0767	99.4790	98.6777	68.4621	19477	102	19477	261	12	4.5977
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0767	99.4790	98.6777	68.4621	19477	102	19477	261	12	4.5977
dgrover-gatk	INDEL	I1_5	map_siren	het	99.0766	98.8102	99.3445	82.4495	1661	20	1667	11	1	9.0909
raldana-dualsentieon	INDEL	*	segdup	het	99.0763	98.7722	99.3823	94.1484	1448	18	1448	9	2	22.2222
raldana-dualsentieon	INDEL	D1_5	map_siren	het	99.0760	98.8142	99.3392	78.2192	2250	27	2255	15	1	6.6667
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0758	99.2593	98.8930	58.8771	268	2	268	3	3	100.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.0758	99.7696	98.3916	38.1103	3897	9	3854	63	6	9.5238
hfeng-pmm1	SNP	tv	map_l150_m1_e0	het	99.0753	98.7331	99.4200	74.8128	6858	88	6856	40	10	25.0000
hfeng-pmm2	SNP	ti	map_l100_m0_e0	het	99.0752	99.2276	98.9232	72.7259	13875	108	13872	151	12	7.9470
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.0742	99.2047	98.9440	72.8770	1871	15	1874	20	6	30.0000
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0742	98.7301	99.4207	71.8442	47658	613	47540	277	83	29.9639
ndellapenna-hhga	INDEL	I1_5	map_l100_m2_e1	homalt	99.0741	99.0741	99.0741	82.5186	535	5	535	5	3	60.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	*	99.0741	98.3690	99.7895	74.1500	20385	338	20385	43	23	53.4884
egarrison-hhga	SNP	tv	map_l100_m0_e0	het	99.0740	98.5184	99.6359	68.9508	7115	107	7115	26	10	38.4615
rpoplin-dv42	SNP	*	map_l150_m2_e0	*	99.0736	98.8855	99.2624	74.9915	31497	355	31491	234	152	64.9573
ndellapenna-hhga	SNP	*	map_l100_m1_e0	het	99.0732	98.3928	99.7631	62.7556	44630	729	44632	106	41	38.6792
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0730	98.4951	99.6577	70.6945	2618	40	2620	9	3	33.3333
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0728	99.4536	98.6949	79.7288	546	3	605	8	1	12.5000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0722	99.3449	98.8011	64.3152	18047	119	18047	219	203	92.6941
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0722	99.3449	98.8011	64.3152	18047	119	18047	219	203	92.6941
qzeng-custom	SNP	ti	HG002complexvar	het	99.0720	98.3388	99.8162	18.0479	309537	5229	307433	566	153	27.0318
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0716	98.5896	99.5583	44.7023	3635	52	3606	16	8	50.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0708	98.8304	99.3124	59.5757	4394	52	4333	30	22	73.3333
dgrover-gatk	INDEL	I6_15	*	het	99.0704	98.9435	99.1977	59.7099	9927	106	9891	80	53	66.2500
jlack-gatk	SNP	*	map_l150_m1_e0	homalt	99.0703	98.3146	99.8379	69.3588	11083	190	11083	18	13	72.2222
egarrison-hhga	INDEL	*	func_cds	het	99.0698	99.5327	98.6111	41.4634	213	1	213	3	0	0.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0697	98.8184	99.3222	69.4679	30775	368	30774	210	73	34.7619
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0697	98.8184	99.3222	69.4679	30775	368	30774	210	73	34.7619
hfeng-pmm2	INDEL	*	func_cds	het	99.0697	99.0654	99.0741	49.1765	212	2	214	2	0	0.0000
hfeng-pmm1	INDEL	*	func_cds	het	99.0697	99.0654	99.0741	46.6667	212	2	214	2	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0696	98.8889	99.2509	60.6195	267	3	265	2	0	0.0000
raldana-dualsentieon	INDEL	I1_5	segdup	het	99.0696	98.8848	99.2551	94.5515	532	6	533	4	0	0.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e0	*	99.0695	98.3571	99.7923	74.0705	20175	337	20175	42	23	54.7619
dgrover-gatk	SNP	tv	map_l125_m2_e0	het	99.0688	99.3488	98.7904	77.6779	10374	68	10372	127	22	17.3228
asubramanian-gatk	SNP	ti	*	het	99.0688	98.2225	99.9298	21.0842	1259105	22786	1259055	884	67	7.5792
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0685	99.1132	99.0238	69.1438	13635	122	13593	134	112	83.5821
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0685	99.1132	99.0238	69.1438	13635	122	13593	134	112	83.5821
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.0685	99.0142	99.1228	89.4371	904	9	904	8	7	87.5000
anovak-vg	SNP	tv	*	homalt	99.0679	98.8237	99.3132	19.4559	372687	4436	371341	2568	1960	76.3240
bgallagher-sentieon	INDEL	D6_15	HG002complexvar	homalt	99.0678	100.0000	98.1528	62.7696	1169	0	1169	22	21	95.4545
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0674	99.0875	99.0472	37.3044	7384	68	7381	71	0	0.0000

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