PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12151-12200 / 86044 show all
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
99.1117
98.9729
99.2509
77.5593
1349141325105
50.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.1114
98.9086
99.3151
72.3170
725872555
100.0000
rpoplin-dv42SNP*map_l125_m2_e1het
99.1114
98.9777
99.2454
71.6791
2933730329331223129
57.8475
jlack-gatkSNPtvmap_l150_m2_e1homalt
99.1112
98.4519
99.7794
72.2800
407064407096
66.6667
ltrigg-rtg2INDELI1_5map_l125_m0_e0homalt
99.1110
99.1228
99.0991
78.8571
113111010
0.0000
ghariani-varprowlSNP*map_l125_m2_e1homalt
99.1110
98.5626
99.6655
70.0625
17280252172805839
67.2414
jpowers-varprowlSNP*map_l125_m1_e0homalt
99.1107
98.5566
99.6710
69.6349
16661244166615540
72.7273
ndellapenna-hhgaINDELD1_5*homalt
99.1101
99.1497
99.0705
58.8372
4851041648497455260
57.1429
jmaeng-gatkINDEL***
99.1098
99.0216
99.1981
60.9184
341171337134103827571621
58.7958
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
raldana-dualsentieonINDEL***
99.1095
98.7566
99.4648
57.7282
340258428434012018301626
88.8525
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.1094
98.3822
99.8474
70.7576
261543261743
75.0000
ltrigg-rtg1SNP*map_l125_m1_e0*
99.1092
98.4292
99.7987
62.1857
44615712446169028
31.1111
anovak-vgSNP**homalt
99.1091
98.7819
99.4384
16.6644
116578714375115843965435522
84.3955
bgallagher-sentieonSNPtvmap_l100_m1_e0het
99.1089
99.5719
98.6501
70.0769
15351661534721025
11.9048
gduggal-bwafbSNPtimap_l100_m2_e1*
99.1089
99.1189
99.0989
68.4487
4904943649051446108
24.2152
ndellapenna-hhgaSNPtimap_l100_m2_e1het
99.1089
98.4335
99.7937
64.2644
30475485304776324
38.0952
hfeng-pmm1SNPtvmap_l125_m0_e0*
99.1084
98.9142
99.3035
75.2093
65597265584613
28.2609
ghariani-varprowlSNPtvmap_l100_m2_e0homalt
99.1079
98.8713
99.3457
66.7718
911010491106039
65.0000
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1076
98.6776
99.5414
71.9967
93200124993118429358
83.4499
hfeng-pmm1SNPtvmap_l150_m2_e0het
99.1075
98.7728
99.4445
75.8631
71638971614010
25.0000
ltrigg-rtg1SNPtimap_l125_m1_e0*
99.1074
98.4080
99.8167
62.4199
28868467288695319
35.8491
dgrover-gatkSNPtimap_l250_m2_e0homalt
99.1074
98.3991
99.8260
86.5878
172128172132
66.6667
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.1071
98.3544
99.8715
46.8458
233139233133
100.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.1067
98.2534
99.9750
43.4659
399471399210
0.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.1063
99.9378
98.2885
58.1479
1608116082818
64.2857
ghariani-varprowlSNP*map_l125_m2_e0homalt
99.1058
98.5554
99.6624
70.0500
17124251171245839
67.2414
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1057
98.5033
99.7155
36.0522
210632210362
33.3333
jpowers-varprowlSNP*func_cdshet
99.1057
99.2922
98.9199
32.1729
1108279110821212
1.6529
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.1054
98.7352
99.4784
63.8767
13583174135417156
78.8732
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.1054
98.7352
99.4784
63.8767
13583174135417156
78.8732
jmaeng-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1051
98.6148
99.6003
69.7196
149521149563
50.0000
asubramanian-gatkINDELI1_5HG002complexvarhet
99.1051
98.3342
99.8882
58.4164
17886303178682013
65.0000
rpoplin-dv42SNP*map_l125_m2_e0het
99.1051
98.9733
99.2372
71.6337
2901730129011223129
57.8475
egarrison-hhgaSNPtvmap_l125_m0_e0*
99.1050
98.5221
99.6948
73.4104
6533986533209
45.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.1048
98.5238
99.6927
45.3838
3604543568112
18.1818
gduggal-bwafbSNPtimap_l100_m2_e0*
99.1045
99.1095
99.0994
68.4259
4852543648527441108
24.4898
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.1045
98.2249
100.0000
84.7380
498949800
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.1042
99.4409
98.7698
49.5614
10672601067813313
9.7744
egarrison-hhgaSNPtimap_l150_m0_e0*
99.1041
98.4989
99.7167
79.0350
774311877432210
45.4545
astatham-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1039
98.4828
99.7328
68.8838
149323149341
25.0000
jpowers-varprowlSNPtv*het
99.1037
99.3176
98.8908
29.6901
58765740385878246593166
2.5178
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1037
98.2234
100.0000
28.2542
116121116300
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
99.1036
99.3780
98.8308
63.1331
27161727053228
87.5000
hfeng-pmm2SNPtvmap_l150_m1_e0*
99.1035
99.2944
98.9134
76.5808
10835771083311914
11.7647
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.1035
98.9086
99.2991
66.9100
48035348173412
35.2941
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1034
98.6295
99.5819
70.6519
6354888364304270244
90.3704
astatham-gatkINDELI1_5segdup*
99.1033
99.0557
99.1509
94.5434
104910105192
22.2222
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.1031
99.1903
99.0160
51.1670
56354656355656
100.0000