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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 237 238 239 240 241 242 243 244 245 ... 1720 1721 » 12001-12050 / 86044 show all
ckim-dragen	SNP	*	map_l250_m2_e1	homalt	99.1340	98.9698	99.2986	84.0205	2690	28	2690	19	16	84.2105
ltrigg-rtg2	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.1338	98.2824	100.0000	60.8029	515	9	537	0	0
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.1337	98.6144	99.6585	48.5413	2918	41	2918	10	2	20.0000
ltrigg-rtg1	INDEL	D1_5	segdup	*	99.1335	98.5494	99.7245	92.9129	1087	16	1086	3	0	0.0000
ltrigg-rtg1	SNP	tv	map_l125_m2_e0	*	99.1334	98.5142	99.7605	64.2909	16244	245	16244	39	9	23.0769
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.1334	99.1581	99.1088	47.3320	2120	18	2113	19	1	5.2632
hfeng-pmm3	INDEL	D16_PLUS	HG002complexvar	homalt	99.1334	98.9619	99.3056	74.9565	286	3	286	2	1	50.0000
hfeng-pmm1	INDEL	D16_PLUS	HG002complexvar	homalt	99.1334	98.9619	99.3056	74.5133	286	3	286	2	1	50.0000
ltrigg-rtg1	SNP	tv	map_l125_m2_e1	*	99.1333	98.5291	99.7448	64.3814	16412	245	16417	42	9	21.4286
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1330	98.7273	99.5420	75.3696	32813	423	32819	151	102	67.5497
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1323	99.5671	98.7013	53.8462	460	2	456	6	6	100.0000
egarrison-hhga	INDEL	I1_5	map_l100_m1_e0	homalt	99.1321	99.2278	99.0366	81.5237	514	4	514	5	2	40.0000
hfeng-pmm1	INDEL	I1_5	map_siren	*	99.1319	98.7354	99.5316	79.6028	2967	38	2975	14	4	28.5714
cchapple-custom	INDEL	*	segdup	*	99.1318	98.9045	99.3602	94.4519	2528	28	2640	17	10	58.8235
qzeng-custom	SNP	tv	segdup	homalt	99.1318	98.9500	99.3142	89.4844	3204	34	3186	22	21	95.4545
qzeng-custom	SNP	ti	HG002complexvar	*	99.1315	98.4529	99.8194	18.2769	500571	7866	493623	893	400	44.7928
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.1314	98.9416	99.3219	67.8823	6170	66	6298	43	25	58.1395
jli-custom	INDEL	I1_5	map_l100_m2_e1	het	99.1307	98.5185	99.7506	83.4469	798	12	800	2	0	0.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1305	99.0001	99.2612	79.9407	10693	108	10748	80	26	32.5000
gduggal-bwafb	INDEL	I1_5	map_l125_m2_e1	homalt	99.1304	99.7085	98.5591	85.6966	342	1	342	5	1	20.0000
rpoplin-dv42	INDEL	D1_5	map_l250_m1_e0	homalt	99.1304	100.0000	98.2759	94.3580	57	0	57	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	map_l125_m0_e0	homalt	99.1304	100.0000	98.2759	85.5721	114	0	114	2	1	50.0000
ndellapenna-hhga	INDEL	I1_5	map_l100_m1_e0	homalt	99.1304	99.0347	99.2263	80.8802	513	5	513	4	2	50.0000
ckim-vqsr	INDEL	I1_5	map_l125_m0_e0	homalt	99.1304	100.0000	98.2759	86.0744	114	0	114	2	1	50.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.1302	99.5045	98.7588	79.7621	4217	21	4217	53	8	15.0943
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1302	98.4848	99.7840	42.2693	455	7	462	1	1	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1301	98.6331	99.6322	53.5853	17607	244	17606	65	30	46.1538
egarrison-hhga	SNP	ti	map_l150_m1_e0	het	99.1299	98.5449	99.7219	75.0856	12190	180	12190	34	13	38.2353
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1298	99.5085	98.7541	58.9047	1822	9	1823	23	1	4.3478
hfeng-pmm2	SNP	tv	map_l150_m2_e0	*	99.1297	99.3219	98.9383	77.9235	11278	77	11276	121	14	11.5702
jpowers-varprowl	SNP	*	map_l125_m2_e0	homalt	99.1290	98.5842	99.6799	71.9156	17129	246	17129	55	40	72.7273
jli-custom	SNP	ti	map_l125_m2_e0	het	99.1286	98.8398	99.4191	70.5575	18657	219	18655	109	33	30.2752
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1285	98.7253	99.5351	51.6909	3640	47	3640	17	14	82.3529
dgrover-gatk	SNP	ti	map_l100_m0_e0	het	99.1285	99.2491	99.0081	74.4536	13878	105	13875	139	28	20.1439
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1285	99.7807	98.4848	70.2320	910	2	910	14	11	78.5714
jli-custom	INDEL	*	map_l100_m2_e0	homalt	99.1284	99.2070	99.0499	83.3333	1251	10	1251	12	6	50.0000
jlack-gatk	INDEL	D1_5	*	het	99.1283	99.6506	98.6115	59.9642	87268	306	87281	1229	246	20.0163
hfeng-pmm2	SNP	ti	map_l125_m0_e0	*	99.1282	99.3496	98.9077	76.2142	12679	83	12677	140	17	12.1429
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.1282	98.9531	99.3039	35.7393	7278	77	7276	51	3	5.8824
anovak-vg	SNP	ti	*	homalt	99.1281	98.7623	99.4967	15.3503	793100	9939	790097	3997	3582	89.6172
ltrigg-rtg1	SNP	*	map_l125_m2_e1	*	99.1279	98.4852	99.7790	64.7783	46487	715	46495	103	28	27.1845
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1277	98.3122	99.9569	36.7876	2330	40	2317	1	1	100.0000
ltrigg-rtg2	SNP	tv	map_siren	het	99.1276	98.6962	99.5628	47.7162	28236	373	28241	124	4	3.2258
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1274	99.6491	98.6111	54.0914	852	3	852	12	0	0.0000
ltrigg-rtg1	SNP	ti	segdup	*	99.1266	99.6417	98.6169	87.5468	19467	70	19465	273	31	11.3553
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
ckim-dragen	SNP	ti	map_l250_m1_e0	homalt	99.1261	98.8177	99.4364	82.0944	1588	19	1588	9	8	88.8889
ckim-dragen	SNP	*	map_l250_m1_e0	homalt	99.1258	98.9850	99.2671	82.5332	2438	25	2438	18	15	83.3333
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	99.1258	98.3867	99.8761	42.1136	3964	65	4032	5	5	100.0000

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