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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 236 237 238 239 240 241 242 243 244 ... 1720 1721 » 11951-12000 / 86044 show all
rpoplin-dv42	SNP	tv	map_l100_m2_e1	het	99.1406	99.1781	99.1032	66.6722	15807	131	15803	143	59	41.2587
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.1405	99.2515	99.0299	57.3248	1326	10	1327	13	3	23.0769
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.1405	98.5558	99.7323	38.6532	2252	33	2235	6	1	16.6667
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1404	98.4353	99.8557	31.3181	692	11	1384	2	1	50.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1404	98.4353	99.8557	46.9778	692	11	692	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	segdup	*	99.1404	98.8571	99.4253	92.0693	173	2	173	1	0	0.0000
ckim-dragen	SNP	ti	map_l250_m2_e0	homalt	99.1399	98.8565	99.4250	83.6036	1729	20	1729	10	9	90.0000
ckim-vqsr	INDEL	D1_5	segdup	*	99.1399	99.1840	99.0958	96.1257	1094	9	1096	10	2	20.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1395	99.1848	99.0942	85.7787	1095	9	1094	10	8	80.0000
egarrison-hhga	SNP	tv	*	hetalt	99.1394	99.1963	99.0826	48.4024	864	7	864	8	8	100.0000
egarrison-hhga	SNP	*	*	hetalt	99.1394	99.1963	99.0826	48.4024	864	7	864	8	8	100.0000
gduggal-snapfb	SNP	ti	map_siren	homalt	99.1394	98.4334	99.8555	57.8682	37322	594	37322	54	29	53.7037
cchapple-custom	INDEL	*	*	*	99.1388	98.8448	99.4346	57.2260	340562	3980	363520	2067	1592	77.0198
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.1387	99.5421	98.7386	58.2561	3913	18	3914	50	1	2.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1386	98.5075	99.7778	71.4829	462	7	449	1	1	100.0000
jli-custom	SNP	ti	map_l125_m2_e1	het	99.1383	98.8526	99.4256	70.6228	18868	219	18866	109	33	30.2752
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1381	99.6239	98.6571	45.3917	11390	43	11387	155	1	0.6452
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1381	98.8474	99.4304	72.0835	5060	59	5237	30	24	80.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.1381	98.5714	99.7113	61.0570	1035	15	1036	3	3	100.0000
ltrigg-rtg1	INDEL	*	map_l250_m2_e0	homalt	99.1379	100.0000	98.2906	94.5808	115	0	115	2	1	50.0000
dgrover-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	85.6730	345	4	345	2	2	100.0000
gduggal-bwafb	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	87.3818	345	4	345	2	2	100.0000
gduggal-bwavard	SNP	tv	*	het	99.1377	99.1291	99.1462	30.0519	586551	5153	584089	5030	1454	28.9066
rpoplin-dv42	SNP	ti	map_l150_m2_e0	*	99.1376	98.9177	99.3584	75.0879	20290	222	20286	131	93	70.9924
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.1373	99.3577	98.9179	69.5704	2011	13	2011	22	5	22.7273
ltrigg-rtg2	SNP	*	segdup	*	99.1371	99.6722	98.6078	87.3153	27975	92	27977	395	53	13.4177
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1370	98.6663	99.6121	66.8126	3847	52	3852	15	10	66.6667
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.1368	98.7619	99.5146	57.7002	1037	13	1025	5	4	80.0000
rpoplin-dv42	SNP	ti	map_l150_m2_e1	*	99.1367	98.9191	99.3552	75.1649	20499	224	20495	133	93	69.9248
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	*	99.1365	98.5592	99.7206	69.3660	16417	240	16417	46	22	47.8261
jli-custom	INDEL	D16_PLUS	HG002complexvar	homalt	99.1364	99.3080	98.9655	73.9209	287	2	287	3	2	66.6667
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1364	98.2877	100.0000	18.5552	574	10	575	0	0
egarrison-hhga	SNP	ti	map_l100_m0_e0	het	99.1363	98.4982	99.7827	69.5619	13773	210	13774	30	14	46.6667
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1361	98.7615	99.5135	67.2304	4705	59	4705	23	10	43.4783
ckim-dragen	INDEL	*	*	*	99.1359	99.1574	99.1143	60.3466	341639	2903	341303	3050	2010	65.9016
hfeng-pmm1	INDEL	*	HG002complexvar	*	99.1357	98.4949	99.7850	57.1428	75780	1158	75642	163	121	74.2331
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.1355	98.3410	99.9430	61.2925	1719	29	1754	1	1	100.0000
ltrigg-rtg2	INDEL	C6_15	HG002complexvar	het	99.1354	100.0000	98.2857	78.8392	4	0	172	3	0	0.0000
jlack-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1354	98.5673	99.7101	84.2033	344	5	344	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	segdup	*	99.1354	98.2857	100.0000	92.5444	172	3	172	0	0
rpoplin-dv42	SNP	tv	map_l100_m2_e0	het	99.1350	99.1697	99.1004	66.6194	15646	131	15642	142	59	41.5493
ltrigg-rtg1	INDEL	*	map_l150_m1_e0	homalt	99.1349	99.3506	98.9201	86.9172	459	3	458	5	3	60.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1348	99.8900	98.3909	39.6771	18163	20	18160	297	4	1.3468
hfeng-pmm3	SNP	*	map_l125_m0_e0	het	99.1347	99.0682	99.2012	76.1218	12546	118	12543	101	9	8.9109
jmaeng-gatk	INDEL	*	map_siren	homalt	99.1343	99.0960	99.1726	81.5411	2631	24	2637	22	15	68.1818
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1341	99.1132	99.1550	87.2227	2347	21	2347	20	8	40.0000
rpoplin-dv42	SNP	tv	map_l125_m1_e0	*	99.1341	99.0072	99.2613	68.8884	15857	159	15855	118	69	58.4746
jpowers-varprowl	SNP	*	map_l125_m2_e1	homalt	99.1340	98.5911	99.6828	71.9295	17285	247	17285	55	40	72.7273
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1340	98.9224	99.3464	71.8750	459	5	456	3	1	33.3333
bgallagher-sentieon	SNP	*	map_l100_m0_e0	*	99.1340	99.3545	98.9146	69.7273	32629	212	32625	358	60	16.7598

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