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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 234 235 236 237 238 239 240 241 242 ... 1720 1721 » 11851-11900 / 86044 show all
jli-custom	INDEL	I1_5	map_l100_m1_e0	het	99.1589	98.5843	99.7403	82.0596	766	11	768	2	0	0.0000
ckim-vqsr	SNP	tv	*	*	99.1585	98.4420	99.8855	27.4583	954582	15108	954496	1094	57	5.2102
hfeng-pmm2	SNP	tv	map_l100_m0_e0	*	99.1581	99.3594	98.9576	71.7097	11013	71	11012	116	15	12.9310
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.1580	99.2264	99.0896	88.0562	1411	11	1415	13	6	46.1538
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1579	98.4076	99.9197	59.2367	34855	564	34845	28	5	17.8571
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.1576	98.5265	99.7969	32.7413	1471	22	1474	3	3	100.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.1576	98.5646	99.7579	44.6381	412	6	412	1	0	0.0000
raldana-dualsentieon	SNP	*	map_l125_m2_e1	*	99.1573	99.2225	99.0922	71.3931	46835	367	46829	429	15	3.4965
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1571	98.6358	99.6839	46.3252	11713	162	11670	37	13	35.1351
ltrigg-rtg1	INDEL	D6_15	*	het	99.1571	98.8268	99.4897	52.9280	11456	136	11308	58	18	31.0345
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1570	98.8791	99.4364	71.0422	1235	14	1235	7	4	57.1429
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1570	98.8791	99.4364	71.0422	1235	14	1235	7	4	57.1429
rpoplin-dv42	INDEL	D6_15	*	homalt	99.1567	98.5141	99.8078	51.4461	6232	94	6233	12	7	58.3333
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1559	98.4882	99.8328	57.1769	3583	55	3583	6	4	66.6667
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.1556	98.3254	100.0000	44.6980	411	7	412	0	0
rpoplin-dv42	SNP	tv	map_l125_m2_e1	*	99.1554	99.0274	99.2837	70.9387	16495	162	16493	119	70	58.8235
raldana-dualsentieon	SNP	tv	map_l100_m2_e0	het	99.1552	99.3345	98.9766	69.6214	15672	105	15668	162	1	0.6173
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1552	98.5347	99.7836	72.0617	32749	487	32742	71	45	63.3803
ckim-dragen	SNP	tv	map_l250_m2_e1	homalt	99.1552	99.2600	99.0506	84.6353	939	7	939	9	7	77.7778
raldana-dualsentieon	SNP	*	map_l125_m2_e0	*	99.1550	99.2145	99.0956	71.3320	46356	367	46350	423	15	3.5461
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	het	99.1544	99.3412	98.9684	69.6842	15833	105	15829	165	1	0.6061
rpoplin-dv42	INDEL	I1_5	segdup	homalt	99.1543	99.1543	99.1543	92.6746	469	4	469	4	4	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1542	99.4744	98.8359	77.1224	9085	48	9085	107	10	9.3458
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1542	99.4744	98.8359	77.1224	9085	48	9085	107	10	9.3458
egarrison-hhga	INDEL	I1_5	map_l100_m2_e0	homalt	99.1533	99.2467	99.0602	83.0249	527	4	527	5	2	40.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1533	98.7528	99.5572	74.0073	1346	17	1349	6	1	16.6667
jlack-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.1533	99.2467	99.0602	82.1116	527	4	527	5	3	60.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1532	99.1262	99.1803	52.5045	1815	16	1815	15	2	13.3333
eyeh-varpipe	SNP	*	*	het	99.1531	99.9599	98.3592	21.9487	1872850	751	1837471	30653	277	0.9037
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1530	98.6794	99.6313	77.5757	1345	18	1351	5	3	60.0000
hfeng-pmm2	INDEL	D1_5	map_siren	*	99.1528	99.3483	98.9580	80.2591	3506	23	3514	37	6	16.2162
gduggal-bwafb	INDEL	I1_5	func_cds	homalt	99.1525	98.3193	100.0000	30.3571	117	2	117	0	0
gduggal-snapfb	INDEL	I1_5	func_cds	homalt	99.1525	98.3193	100.0000	31.1765	117	2	117	0	0
dgrover-gatk	SNP	*	map_l125_m1_e0	het	99.1524	99.3097	98.9956	76.1623	28196	196	28190	286	55	19.2308
dgrover-gatk	SNP	*	map_l150_m1_e0	*	99.1521	99.1473	99.1569	77.1188	30348	261	30342	258	59	22.8682
gduggal-bwafb	INDEL	D1_5	map_l100_m1_e0	homalt	99.1521	98.8176	99.4889	84.7770	585	7	584	3	3	100.0000
jpowers-varprowl	SNP	tv	map_l100_m1_e0	homalt	99.1519	98.9052	99.3999	66.3513	8944	99	8944	54	39	72.2222
ndellapenna-hhga	INDEL	I1_5	map_l100_m2_e0	homalt	99.1517	99.0584	99.2453	82.4212	526	5	526	4	2	50.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1511	98.7248	99.5812	37.8775	6658	86	6657	28	16	57.1429
jmaeng-gatk	INDEL	D1_5	map_l100_m1_e0	homalt	99.1511	98.6486	99.6587	83.2763	584	8	584	2	2	100.0000
jli-custom	SNP	*	map_l150_m1_e0	*	99.1511	98.8337	99.4706	71.1384	30252	357	30249	161	58	36.0248
ndellapenna-hhga	INDEL	I1_5	HG002complexvar	homalt	99.1510	99.0259	99.2764	48.8027	13317	131	13308	97	57	58.7629
bgallagher-sentieon	INDEL	*	map_l125_m2_e0	homalt	99.1509	99.4758	98.8281	86.7266	759	4	759	9	4	44.4444
ckim-dragen	INDEL	D1_5	map_l100_m1_e0	homalt	99.1508	98.6486	99.6581	83.0336	584	8	583	2	2	100.0000
ckim-dragen	SNP	ti	*	hetalt	99.1507	99.8282	98.4823	48.3899	581	1	584	9	9	100.0000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1505	98.3978	99.9147	54.8907	17565	286	17565	15	4	26.6667
bgallagher-sentieon	SNP	tv	map_l125_m1_e0	*	99.1503	99.4630	98.8396	71.8727	15930	86	15928	187	28	14.9733
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1501	98.3146	100.0000	80.6416	175	3	175	0	0

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