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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 233 234 235 236 237 238 239 240 241 ... 1720 1721 » 11801-11850 / 86044 show all
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
anovak-vg	SNP	ti	func_cds	homalt	99.1630	98.9384	99.3887	18.9378	5219	56	5203	32	30	93.7500
eyeh-varpipe	SNP	ti	map_l100_m0_e0	*	99.1630	99.6279	98.7023	71.7657	21690	81	21373	281	15	5.3381
bgallagher-sentieon	INDEL	*	map_l125_m2_e1	homalt	99.1629	99.4832	98.8447	86.8279	770	4	770	9	4	44.4444
raldana-dualsentieon	INDEL	D1_5	map_siren	*	99.1622	98.8665	99.4596	79.2799	3489	40	3497	19	5	26.3158
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	*	99.1616	98.5022	99.8299	57.5831	32225	490	32276	55	41	74.5455
egarrison-hhga	SNP	ti	map_l150_m2_e1	het	99.1616	98.6016	99.7280	76.3347	12833	182	12833	35	13	37.1429
eyeh-varpipe	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1613	99.3118	99.0113	50.7900	20060	139	19027	190	66	34.7368
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.1612	99.7917	98.5386	73.9012	1437	3	1416	21	0	0.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1612	99.0320	99.2908	52.9835	2660	26	2660	19	2	10.5263
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.1609	99.8464	98.4848	39.5973	1950	3	1950	30	30	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1609	98.4997	99.8312	49.4969	5843	89	5913	10	6	60.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.1608	99.0431	99.2788	45.5497	414	4	413	3	0	0.0000
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1608	98.9184	99.4045	76.5307	6036	66	6009	36	20	55.5556
ckim-gatk	INDEL	*	map_l125_m2_e1	homalt	99.1607	99.2248	99.0968	87.3717	768	6	768	7	4	57.1429
egarrison-hhga	SNP	ti	map_l150_m2_e0	het	99.1606	98.5948	99.7330	76.2545	12700	181	12700	34	13	38.2353
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.1605	98.5173	99.8122	66.6528	4784	72	4784	9	8	88.8889
hfeng-pmm2	SNP	ti	map_l125_m1_e0	het	99.1603	99.2500	99.0708	74.2780	18129	137	18125	170	14	8.2353
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	81.5047	59	1	59	0	0
jlack-gatk	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	94.2774	59	1	59	0	0
jlack-gatk	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	94.4497	59	1	59	0	0
hfeng-pmm3	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	93.2262	59	1	59	0	0
hfeng-pmm3	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	93.4004	59	1	59	0	0
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	80.7818	59	1	59	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	94.0524	59	1	59	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	94.2326	59	1	59	0	0
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	80.5281	59	1	59	0	0
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.1597	100.0000	98.3333	64.0719	59	0	59	1	1	100.0000
astatham-gatk	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	94.7788	59	1	59	0	0
astatham-gatk	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	94.9225	59	1	59	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	81.3880	59	1	59	0	0
bgallagher-sentieon	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	94.6895	59	1	59	0	0
bgallagher-sentieon	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	94.8381	59	1	59	0	0
eyeh-varpipe	SNP	ti	map_siren	het	99.1597	99.7515	98.5748	60.2517	62227	155	60657	877	34	3.8769
eyeh-varpipe	SNP	ti	segdup	hetalt	99.1597	100.0000	98.3333	95.5390	2	0	59	1	1	100.0000
gduggal-snapfb	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	96.7367	59	1	59	0	0
gduggal-snapfb	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	96.8074	59	1	59	0	0
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	80.0676	59	1	59	0	0
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	78.3883	59	1	59	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	95.0669	59	1	59	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	95.1915	59	1	59	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	81.5047	59	1	59	0	0
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	80.9677	59	1	59	0	0
cchapple-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1597	98.9715	99.3486	67.2313	4715	49	4728	31	4	12.9032
ckim-gatk	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	95.0669	59	1	59	0	0
ckim-gatk	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	95.1915	59	1	59	0	0
ltrigg-rtg2	INDEL	I1_5	func_cds	het	99.1597	100.0000	98.3333	25.9259	59	0	59	1	0	0.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	88.4157	59	1	68	0	0
egarrison-hhga	SNP	tv	HG002compoundhet	homalt	99.1596	99.2326	99.0866	43.1871	3362	26	3363	31	28	90.3226

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