PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 231 232 233 234 235 236 237 238 239 ... 1720 1721 » 11701-11750 / 86044 show all
jli-custom	INDEL	*	segdup	*	99.1762	98.9437	99.4099	94.0244	2529	27	2527	15	7	46.6667
rpoplin-dv42	SNP	ti	map_l100_m0_e0	*	99.1759	98.9481	99.4047	66.3363	21542	229	21539	129	85	65.8915
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.1754	99.4737	98.8789	38.7923	1323	7	1323	15	13	86.6667
gduggal-bwafb	SNP	*	map_l150_m0_e0	homalt	99.1750	98.4837	99.8760	78.3354	4027	62	4027	5	4	80.0000
cchapple-custom	INDEL	I1_5	segdup	het	99.1750	98.6989	99.6558	95.3303	531	7	579	2	0	0.0000
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.1748	98.8355	99.5163	68.9098	1358	16	1646	8	6	75.0000
eyeh-varpipe	SNP	ti	map_l150_m2_e1	*	99.1748	99.6284	98.7252	78.8203	20646	77	20291	262	16	6.1069
ltrigg-rtg2	SNP	tv	map_l100_m1_e0	*	99.1748	98.6001	99.7563	54.0248	24158	343	24152	59	5	8.4746
hfeng-pmm2	SNP	ti	map_l125_m2_e0	het	99.1742	99.2636	99.0849	75.4183	18737	139	18733	173	14	8.0925
dgrover-gatk	SNP	*	map_l150_m2_e1	*	99.1741	99.1773	99.1710	78.4616	31945	265	31939	267	60	22.4719
dgrover-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.1736	98.9011	99.4475	86.3961	360	4	360	2	2	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	61.2378	120	2	119	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	63.0435	120	2	119	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	58.6806	120	2	119	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.1065	120	2	119	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	70.2970	120	2	120	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.3857	120	2	119	0	0
rpoplin-dv42	INDEL	D1_5	map_l250_m2_e0	homalt	99.1736	100.0000	98.3607	94.7952	60	0	60	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	map_l250_m2_e1	homalt	99.1736	100.0000	98.3607	94.9670	60	0	60	1	1	100.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	68.7500	120	2	120	0	0
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.9327	120	2	119	0	0
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	61.2378	120	2	119	0	0
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	99.1736	100.0000	98.3607	83.9895	2	0	60	1	1	100.0000
gduggal-bwafb	INDEL	D1_5	map_l125_m2_e0	homalt	99.1736	98.9011	99.4475	87.9894	360	4	360	2	2	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	63.0435	120	2	119	0	0
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	47.7208	120	2	367	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	64.2643	120	2	119	0	0
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	66.4671	60	1	56	0	0
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	64.1566	120	2	119	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	62.9283	120	2	119	0	0
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	67.0588	60	1	56	0	0
ckim-vqsr	SNP	*	HG002compoundhet	het	99.1735	98.5964	99.7573	46.7768	13979	199	13977	34	25	73.5294
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1734	98.6530	99.6994	37.5173	11279	154	11276	34	0	0.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.1734	98.5778	99.7763	50.5713	1317	19	1338	3	1	33.3333
ltrigg-rtg1	INDEL	D1_5	HG002complexvar	het	99.1733	98.7383	99.6122	51.3027	20503	262	20294	79	31	39.2405
ckim-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1730	98.8786	99.4691	69.5432	1499	17	1499	8	2	25.0000
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1729	98.6761	99.6748	69.3950	32796	440	42603	139	118	84.8921
hfeng-pmm3	SNP	*	map_l150_m0_e0	*	99.1727	99.1439	99.2015	79.7142	11929	103	11926	96	9	9.3750
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.1727	98.8666	99.4807	69.4042	3053	35	3065	16	11	68.7500
qzeng-custom	INDEL	I1_5	*	homalt	99.1725	99.1196	99.2255	48.3268	59896	532	59833	467	326	69.8073
hfeng-pmm3	SNP	ti	map_l250_m2_e1	*	99.1724	99.1529	99.1920	88.8826	5033	43	5033	41	5	12.1951
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.1721	99.8428	98.5103	52.2176	2540	4	2579	39	0	0.0000
asubramanian-gatk	INDEL	I1_5	func_cds	*	99.1720	99.4444	98.9011	44.5122	179	1	180	2	0	0.0000
qzeng-custom	INDEL	I1_5	func_cds	*	99.1720	99.4444	98.9011	34.7670	179	1	180	2	0	0.0000
raldana-dualsentieon	INDEL	I1_5	func_cds	*	99.1720	99.4444	98.9011	32.5926	179	1	180	2	0	0.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.1720	99.7378	98.6126	26.3903	7228	19	7179	101	98	97.0297
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1719	98.7467	99.6008	69.5995	1497	19	1497	6	2	33.3333
jli-custom	SNP	*	map_l150_m2_e1	*	99.1717	98.8823	99.4628	73.1735	31850	360	31847	172	59	34.3023
bgallagher-sentieon	SNP	tv	map_l125_m2_e0	*	99.1716	99.4784	98.8667	73.4826	16403	86	16401	188	28	14.8936
dgrover-gatk	SNP	*	map_l125_m2_e1	het	99.1713	99.3286	99.0144	77.3174	29441	199	29435	293	56	19.1126

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge