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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 225 226 227 228 229 230 231 232 233 ... 1720 1721 » 11401-11450 / 86044 show all
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.2232	98.5968	99.8577	35.0385	2108	30	2105	3	0	0.0000
jlack-gatk	INDEL	*	HG002complexvar	*	99.2231	99.0863	99.3603	58.0205	76235	703	76113	490	357	72.8571
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2231	99.8046	98.6484	46.1418	5107	10	5109	70	68	97.1429
dgrover-gatk	SNP	tv	map_l125_m1_e0	*	99.2231	99.2882	99.1581	73.2603	15902	114	15900	135	27	20.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2229	99.4523	98.9946	49.9952	10350	57	10339	105	98	93.3333
dgrover-gatk	SNP	ti	map_l125_m2_e1	het	99.2226	99.3137	99.1317	77.0880	18956	131	18952	166	34	20.4819
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2222	98.5461	99.9076	38.9281	2169	32	2163	2	2	100.0000
eyeh-varpipe	SNP	tv	map_l250_m0_e0	homalt	99.2221	98.9637	99.4819	94.6493	191	2	192	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2219	99.3862	99.0582	74.4553	33032	204	33027	314	203	64.6497
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2218	98.8372	99.6094	61.6766	255	3	255	1	1	100.0000
gduggal-bwafb	INDEL	D1_5	map_l100_m0_e0	homalt	99.2218	98.8372	99.6094	86.6736	255	3	255	1	1	100.0000
egarrison-hhga	INDEL	D1_5	map_l100_m0_e0	homalt	99.2218	98.8372	99.6094	84.1584	255	3	255	1	1	100.0000
bgallagher-sentieon	SNP	*	map_l100_m1_e0	het	99.2217	99.5084	98.9366	68.7750	45136	223	45125	485	63	12.9897
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2214	99.5485	98.8965	52.5869	11245	51	19268	215	45	20.9302
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.2210	98.8562	99.5885	62.9799	1210	14	1210	5	5	100.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e1	het	99.2207	99.5181	98.9251	70.1134	46672	226	46661	507	63	12.4260
hfeng-pmm1	INDEL	*	map_l100_m2_e1	homalt	99.2206	99.3755	99.0661	82.8094	1273	8	1273	12	5	41.6667
hfeng-pmm3	SNP	tv	map_l150_m2_e0	het	99.2203	99.1589	99.2819	76.4022	7191	61	7189	52	5	9.6154
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2201	98.6457	99.8013	56.9126	19593	269	19586	39	21	53.8462
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2196	98.8975	99.5437	78.3395	1525	17	1527	7	4	57.1429
ckim-vqsr	INDEL	*	map_l100_m2_e1	homalt	99.2194	99.2194	99.2194	85.2079	1271	10	1271	10	5	50.0000
ltrigg-rtg2	SNP	*	map_l100_m1_e0	*	99.2192	98.6340	99.8113	53.5259	71414	989	71410	135	22	16.2963
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.2192	98.7929	99.6492	71.7503	3110	38	3125	11	9	81.8182
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2190	99.9172	98.5304	36.2675	7241	6	7241	108	107	99.0741
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2183	99.7479	98.6942	45.7109	6727	17	6727	89	2	2.2472
astatham-gatk	SNP	ti	HG002complexvar	*	99.2181	98.4614	99.9866	17.7102	500613	7823	500548	67	41	61.1940
jli-custom	SNP	tv	map_l100_m2_e1	het	99.2181	99.1279	99.3085	65.9029	15799	139	15798	110	24	21.8182
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2177	99.0809	99.3548	63.5417	1078	10	1078	7	4	57.1429
dgrover-gatk	SNP	*	map_l100_m0_e0	*	99.2175	99.2266	99.2084	71.3904	32587	254	32583	260	57	21.9231
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2174	99.3885	99.0469	69.9044	3738	23	3741	36	34	94.4444
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2174	99.3885	99.0469	69.9044	3738	23	3741	36	34	94.4444
hfeng-pmm2	INDEL	I1_5	map_siren	*	99.2171	99.0017	99.4335	80.3741	2975	30	2984	17	4	23.5294
raldana-dualsentieon	SNP	tv	map_l125_m2_e1	*	99.2171	99.2976	99.1368	71.9418	16540	117	16538	144	4	2.7778
jmaeng-gatk	SNP	tv	HG002complexvar	homalt	99.2171	98.4618	99.9840	23.0284	93648	1463	93634	15	13	86.6667
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2169	98.7151	99.7238	50.1102	3611	47	3611	10	4	40.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2169	98.7151	99.7238	50.4244	3611	47	3611	10	3	30.0000
jpowers-varprowl	SNP	ti	map_l125_m1_e0	homalt	99.2166	98.6148	99.8259	68.6168	10892	153	10892	19	15	78.9474
dgrover-gatk	SNP	ti	map_l125_m2_e0	het	99.2165	99.3060	99.1273	77.0589	18745	131	18741	165	34	20.6061
ltrigg-rtg2	SNP	*	map_siren	het	99.2163	98.7812	99.6552	46.0328	89881	1109	89887	311	15	4.8232
jli-custom	SNP	ti	map_l150_m2_e1	*	99.2158	98.9046	99.5289	73.2251	20496	227	20494	97	36	37.1134
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2158	98.9203	99.5131	53.0673	2657	29	2657	13	2	15.3846
jli-custom	INDEL	I1_5	map_l125_m1_e0	*	99.2158	99.0361	99.3961	84.2466	822	8	823	5	2	40.0000
hfeng-pmm2	INDEL	*	map_l125_m2_e0	homalt	99.2157	99.4758	98.9570	85.4238	759	4	759	8	4	50.0000
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2155	98.8292	99.6047	53.9964	17642	209	17640	70	27	38.5714
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2155	98.8831	99.5502	52.7537	2656	30	2656	12	1	8.3333
jli-custom	INDEL	I1_5	map_siren	*	99.2153	98.8353	99.5983	78.8156	2970	35	2975	12	4	33.3333
dgrover-gatk	SNP	ti	map_l125_m1_e0	het	99.2150	99.2992	99.1308	75.9575	18138	128	18134	159	33	20.7547
jmaeng-gatk	SNP	tv	HG002compoundhet	het	99.2149	98.7160	99.7189	56.1374	4613	60	4611	13	11	84.6154
jli-custom	INDEL	*	map_l125_m2_e0	homalt	99.2147	99.3447	99.0850	85.6014	758	5	758	7	4	57.1429
qzeng-custom	SNP	tv	HG002complexvar	homalt	99.2146	98.6185	99.8179	23.3623	93797	1314	91543	167	141	84.4311

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