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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 221 222 223 224 225 226 227 228 229 ... 1720 1721 » 11201-11250 / 86044 show all
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.2504	99.2513	99.2495	62.6333	15642	118	15472	117	78	66.6667
bgallagher-sentieon	INDEL	*	map_l125_m1_e0	homalt	99.2502	99.4536	99.0476	85.8491	728	4	728	7	4	57.1429
gduggal-snapfb	SNP	*	*	*	99.2501	99.8026	98.7037	23.6262	3048604	6030	3049548	40049	2047	5.1112
gduggal-snapvard	SNP	*	func_cds	het	99.2494	99.0323	99.4675	33.3113	11053	108	11020	59	21	35.5932
rpoplin-dv42	INDEL	I1_5	*	*	99.2493	99.0230	99.4767	57.6844	149192	1472	149236	785	730	92.9936
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2492	99.3985	99.1004	39.5833	1322	8	1322	12	10	83.3333
ndellapenna-hhga	SNP	ti	map_l250_m1_e0	homalt	99.2491	98.6932	99.8112	85.5873	1586	21	1586	3	3	100.0000
hfeng-pmm1	INDEL	*	map_l125_m1_e0	homalt	99.2491	99.3169	99.1814	84.1205	727	5	727	6	3	50.0000
jli-custom	INDEL	*	map_l125_m1_e0	homalt	99.2491	99.3169	99.1814	84.5684	727	5	727	6	4	66.6667
ckim-dragen	INDEL	D6_15	*	het	99.2490	99.4651	99.0338	63.3339	11530	62	11480	112	67	59.8214
jlack-gatk	SNP	ti	map_l125_m2_e1	homalt	99.2489	98.6036	99.9027	66.4043	11298	160	11298	11	9	81.8182
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	*	99.2488	98.7471	99.7557	52.7857	32944	418	32259	79	48	60.7595
rpoplin-dv42	SNP	tv	map_l150_m1_e0	homalt	99.2485	98.7329	99.7695	71.6659	3896	50	3896	9	9	100.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e0	homalt	99.2481	100.0000	98.5075	88.2181	201	0	198	3	1	33.3333
ltrigg-rtg2	INDEL	I1_5	map_l150_m0_e0	homalt	99.2481	98.5075	100.0000	83.5476	66	1	64	0	0
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e0	homalt	99.2481	99.0050	99.4924	85.2434	199	2	196	1	0	0.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2481	98.5075	100.0000	78.1553	462	7	450	0	0
hfeng-pmm3	INDEL	I1_5	map_l150_m1_e0	homalt	99.2481	100.0000	98.5075	84.9099	198	0	198	3	2	66.6667
hfeng-pmm2	INDEL	I1_5	map_l150_m1_e0	homalt	99.2481	100.0000	98.5075	85.6017	198	0	198	3	2	66.6667
hfeng-pmm1	INDEL	I1_5	map_l150_m1_e0	homalt	99.2481	100.0000	98.5075	85.7548	198	0	198	3	2	66.6667
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2481	98.5075	100.0000	83.7381	462	7	462	0	0
jli-custom	INDEL	I1_5	map_l150_m1_e0	homalt	99.2481	100.0000	98.5075	85.5603	198	0	198	3	2	66.6667
astatham-gatk	INDEL	I1_5	map_l150_m1_e0	homalt	99.2481	100.0000	98.5075	86.7676	198	0	198	3	2	66.6667
bgallagher-sentieon	INDEL	I1_5	map_l150_m1_e0	homalt	99.2481	100.0000	98.5075	86.5010	198	0	198	3	2	66.6667
ckim-vqsr	INDEL	*	map_l125_m1_e0	homalt	99.2481	99.1803	99.3160	86.5054	726	6	726	5	3	60.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.2481	100.0000	98.5075	67.1569	68	0	66	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2481	99.2481	99.2481	82.9814	264	2	264	2	1	50.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	*	99.2480	98.6784	99.8242	55.9018	48831	654	48833	86	19	22.0930
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2477	99.2381	99.2572	75.1119	5080	39	5078	38	20	52.6316
hfeng-pmm2	SNP	*	map_l150_m2_e0	*	99.2475	99.3878	99.1076	77.7218	31657	195	31651	285	34	11.9298
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2470	98.6527	99.8485	51.0567	1318	18	1318	2	0	0.0000
hfeng-pmm3	INDEL	*	map_l100_m2_e0	homalt	99.2469	99.2863	99.2076	82.1525	1252	9	1252	10	4	40.0000
ltrigg-rtg1	INDEL	*	map_l125_m1_e0	homalt	99.2467	99.1803	99.3132	84.0316	726	6	723	5	3	60.0000
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2467	99.6334	98.8630	62.3274	10871	40	10869	125	24	19.2000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2465	99.7835	98.7152	64.0769	461	1	461	6	6	100.0000
jli-custom	SNP	tv	map_l125_m1_e0	*	99.2462	99.0572	99.4359	66.9313	15865	151	15864	90	26	28.8889
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2458	98.7161	99.7811	57.1497	19607	255	19600	43	25	58.1395
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.2455	99.2320	99.2591	40.7060	3876	30	3885	29	10	34.4828
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.2454	98.9362	99.5565	60.8846	465	5	449	2	0	0.0000
jli-custom	INDEL	*	HG002complexvar	*	99.2454	98.7574	99.7382	56.8994	75982	956	75827	199	151	75.8794
hfeng-pmm1	SNP	ti	map_l125_m2_e1	het	99.2454	98.8841	99.6094	71.5149	18874	213	18870	74	18	24.3243
dgrover-gatk	SNP	tv	map_l125_m2_e0	*	99.2454	99.3086	99.1822	74.7468	16375	114	16373	135	27	20.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2453	98.8722	99.6212	80.9111	263	3	263	1	1	100.0000
jli-custom	INDEL	I1_5	map_l100_m2_e1	*	99.2452	98.9247	99.5677	82.8600	1380	15	1382	6	3	50.0000
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2452	99.2509	99.2395	60.2118	265	2	261	2	2	100.0000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2451	98.5461	99.9540	42.2689	2169	32	2172	1	1	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.2450	99.0076	99.4836	62.5686	4789	48	4816	25	3	12.0000
jpowers-varprowl	SNP	ti	map_l125_m2_e1	homalt	99.2450	98.6647	99.8322	70.9730	11305	153	11305	19	15	78.9474
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2445	98.8084	99.6845	73.8057	5058	61	5056	16	7	43.7500
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2444	98.7425	99.7514	50.7816	3612	46	3612	9	3	33.3333

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