PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 219 220 221 222 223 224 225 226 227 ... 1720 1721 » 11101-11150 / 86044 show all
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2662	99.3541	99.1784	74.9780	1692	11	1690	14	3	21.4286
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2661	99.8221	98.7161	56.1302	6173	11	6305	82	1	1.2195
bgallagher-sentieon	INDEL	D1_5	map_siren	*	99.2660	99.4899	99.0431	81.6382	3511	18	3519	34	6	17.6471
ndellapenna-hhga	SNP	*	map_l250_m1_e0	homalt	99.2653	98.7414	99.7948	85.6165	2432	31	2432	5	5	100.0000
qzeng-custom	SNP	*	segdup	homalt	99.2653	99.1250	99.4061	87.8458	10649	94	10544	63	57	90.4762
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2650	98.9969	99.5345	87.4939	1283	13	1283	6	4	66.6667
jli-custom	SNP	tv	map_l125_m2_e0	*	99.2648	99.0782	99.4521	69.0688	16337	152	16336	90	26	28.8889
bgallagher-sentieon	SNP	*	segdup	het	99.2648	99.8268	98.7091	91.1291	17287	30	17281	226	2	0.8850
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2647	99.7712	98.7633	53.6568	5668	13	5670	71	69	97.1831
bgallagher-sentieon	SNP	*	map_l125_m1_e0	*	99.2644	99.4418	99.0876	71.3529	45074	253	45068	415	70	16.8675
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2643	98.8474	99.6847	73.5302	5060	59	5058	16	12	75.0000
hfeng-pmm1	SNP	*	map_l125_m2_e0	het	99.2641	98.9290	99.6016	71.5339	29004	314	28998	116	29	25.0000
egarrison-hhga	INDEL	D1_5	map_l100_m2_e0	homalt	99.2641	99.3453	99.1830	83.4862	607	4	607	5	4	80.0000
egarrison-hhga	SNP	*	HG002compoundhet	homalt	99.2639	99.4064	99.1218	35.3785	10718	64	10722	95	82	86.3158
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2639	98.7961	99.7361	66.9655	2626	32	2646	7	4	57.1429
rpoplin-dv42	SNP	*	map_l100_m1_e0	het	99.2638	99.1402	99.3876	64.2170	44969	390	44957	277	141	50.9025
asubramanian-gatk	INDEL	D1_5	*	*	99.2637	98.9281	99.6016	61.0980	145172	1573	145253	581	383	65.9208
ckim-dragen	INDEL	*	*	homalt	99.2636	99.8234	98.7101	59.5235	124951	221	124887	1632	1607	98.4681
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	het	99.2634	99.4775	99.0503	69.3746	30462	160	30455	292	38	13.0137
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2629	99.2900	99.2358	50.5266	1818	13	1818	14	0	0.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e1	homalt	99.2629	100.0000	98.5366	88.2723	204	0	202	3	1	33.3333
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2628	99.1167	99.4094	87.9803	2693	24	2693	16	14	87.5000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2626	99.2439	99.2814	84.2685	2625	20	2625	19	7	36.8421
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.2625	98.9379	99.5892	62.6573	1211	13	1212	5	5	100.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.2624	99.1501	99.3749	64.2935	6183	53	6200	39	5	12.8205
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2623	98.7000	99.8311	74.5091	2961	39	2955	5	1	20.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.2620	98.5348	100.0000	70.7344	538	8	530	0	0
ltrigg-rtg2	INDEL	I1_5	map_l125_m2_e0	homalt	99.2619	98.8270	99.7006	80.6936	337	4	333	1	0	0.0000
hfeng-pmm2	SNP	tv	map_l100_m1_e0	het	99.2617	99.4357	99.0884	69.5075	15330	87	15326	141	12	8.5106
gduggal-snapvard	SNP	tv	func_cds	homalt	99.2613	98.5915	99.9402	26.1484	1680	24	1671	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2612	99.0548	99.4685	84.3994	2620	25	2620	14	6	42.8571
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e1	homalt	99.2606	99.4444	99.0775	82.2062	537	3	537	5	3	60.0000
raldana-dualsentieon	INDEL	D1_5	map_l100_m2_e0	homalt	99.2605	98.8543	99.6700	82.3014	604	7	604	2	2	100.0000
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e1	homalt	99.2605	99.0196	99.5025	85.2747	202	2	200	1	0	0.0000
egarrison-hhga	SNP	ti	map_l125_m2_e1	het	99.2602	98.7583	99.7671	71.8965	18850	237	18850	44	16	36.3636
egarrison-hhga	SNP	ti	map_l125_m2_e0	het	99.2599	98.7550	99.7699	71.8619	18641	235	18641	43	16	37.2093
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2598	99.1413	99.3785	84.5990	1501	13	1439	9	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	*	homalt	99.2597	99.0544	99.4659	65.7799	1676	16	1676	9	4	44.4444
ckim-gatk	SNP	tv	HG002compoundhet	het	99.2595	98.9728	99.5478	55.8932	4625	48	4623	21	13	61.9048
ckim-vqsr	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	89.5385	67	0	67	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	88.9610	67	0	67	1	1	100.0000
ndellapenna-hhga	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	88.5714	67	0	67	1	1	100.0000
bgallagher-sentieon	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	88.1257	201	0	201	3	2	66.6667
astatham-gatk	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	88.3095	201	0	201	3	2	66.6667
gduggal-bwafb	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	90.3272	67	0	67	1	1	100.0000
hfeng-pmm1	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	87.5686	201	0	201	3	2	66.6667
hfeng-pmm2	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	87.3449	201	0	201	3	2	66.6667
jli-custom	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	87.3449	201	0	201	3	2	66.6667
hfeng-pmm3	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	86.7961	201	0	201	3	2	66.6667
hfeng-pmm3	INDEL	*	map_l100_m2_e1	homalt	99.2587	99.2974	99.2200	82.2364	1272	9	1272	10	4	40.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge