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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 213 214 215 216 217 218 219 220 221 ... 1720 1721 » 10801-10850 / 86044 show all
ltrigg-rtg1	SNP	*	map_l100_m1_e0	*	99.3061	98.8274	99.7894	56.8168	71554	849	71550	151	36	23.8411
ltrigg-rtg1	SNP	*	map_l100_m2_e0	*	99.3059	98.8413	99.7748	59.2762	73107	857	73104	165	38	23.0303
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3059	99.0585	99.5546	59.8847	19675	187	19668	88	46	52.2727
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3055	99.0812	99.5308	74.4619	63839	592	63852	301	259	86.0465
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3054	99.0537	99.5584	45.3803	2931	28	2931	13	0	0.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3053	98.6647	99.9543	56.5280	10936	148	10933	5	2	40.0000
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3053	99.0106	99.6019	68.7862	1501	15	1501	6	1	16.6667
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3051	98.7492	99.8673	37.3573	11290	143	11287	15	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3050	98.9840	99.6281	65.8771	3215	33	3215	12	2	16.6667
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3046	99.1667	99.4429	87.9933	714	6	714	4	3	75.0000
hfeng-pmm2	SNP	tv	map_l125_m2_e1	*	99.3046	99.4537	99.1559	73.9708	16566	91	16564	141	16	11.3475
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3046	98.8920	99.7207	63.3572	357	4	357	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3045	99.1512	99.4582	87.3902	1285	11	1285	7	6	85.7143
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3045	99.1512	99.4582	87.3902	1285	11	1285	7	6	85.7143
jli-custom	SNP	tv	map_l250_m2_e0	homalt	99.3044	99.0395	99.5708	85.4375	928	9	928	4	4	100.0000
ndellapenna-hhga	SNP	ti	HG002compoundhet	hetalt	99.3043	98.6183	100.0000	23.0458	571	8	571	0	0
qzeng-custom	SNP	ti	segdup	homalt	99.3042	99.2005	99.4081	87.0359	7445	60	7390	44	39	88.6364
dgrover-gatk	SNP	tv	map_l100_m2_e0	het	99.3042	99.5246	99.0848	72.9235	15702	75	15698	145	24	16.5517
ndellapenna-hhga	INDEL	*	func_cds	het	99.3039	100.0000	98.6175	41.5094	214	0	214	3	0	0.0000
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3038	99.8611	98.7526	69.4861	1438	2	1425	18	1	5.5556
raldana-dualsentieon	INDEL	*	*	het	99.3035	99.0228	99.5858	57.9096	192236	1897	191867	798	611	76.5664
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3035	98.8131	99.7988	59.4317	16234	195	16370	33	3	9.0909
qzeng-custom	INDEL	D1_5	segdup	homalt	99.3034	99.4429	99.1643	93.1723	357	2	356	3	2	66.6667
qzeng-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3033	99.1013	99.5062	65.8995	1213	11	1209	6	3	50.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3031	98.7158	99.8974	47.9345	2921	38	2921	3	1	33.3333
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3028	98.7861	99.8249	33.3463	1709	21	1710	3	2	66.6667
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3025	98.9571	99.6503	63.7669	854	9	855	3	2	66.6667
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3024	98.7283	99.8831	33.4500	1708	22	1709	2	1	50.0000
jlack-gatk	SNP	*	func_cds	*	99.3020	99.9614	98.6513	31.6355	18143	7	18140	248	1	0.4032
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3019	98.7847	99.8246	69.4206	569	7	569	1	1	100.0000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3018	99.7594	98.8483	62.1581	2488	6	2489	29	0	0.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3017	99.3248	99.2786	49.2620	4266	29	4266	31	2	6.4516
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3017	99.1632	99.4406	55.8914	711	6	711	4	3	75.0000
bgallagher-sentieon	INDEL	I1_5	map_siren	*	99.3016	99.2346	99.3688	80.4976	2982	23	2991	19	5	26.3158
jmaeng-gatk	INDEL	*	*	het	99.3015	99.4880	99.1156	62.5254	193139	994	192770	1720	614	35.6977
ckim-dragen	SNP	*	map_l150_m0_e0	homalt	99.3015	99.0707	99.5334	70.2317	4051	38	4053	19	16	84.2105
egarrison-hhga	SNP	tv	map_l150_m2_e1	*	99.3012	98.8437	99.7631	74.2719	11369	133	11369	27	12	44.4444
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3011	99.7679	98.8387	65.0271	3869	9	3830	45	3	6.6667
astatham-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3009	98.6611	99.9489	57.4118	17612	239	17611	9	2	22.2222
jmaeng-gatk	SNP	*	HG002complexvar	homalt	99.3008	98.6263	99.9845	20.0307	284610	3964	284586	44	39	88.6364
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3007	99.0279	99.5750	78.5377	10696	105	10777	46	21	45.6522
hfeng-pmm3	SNP	tv	tech_badpromoters	*	99.3007	98.6111	100.0000	48.9209	71	1	71	0	0
hfeng-pmm1	SNP	tv	tech_badpromoters	*	99.3007	98.6111	100.0000	49.6454	71	1	71	0	0
jlack-gatk	SNP	*	HG002compoundhet	het	99.3003	99.6050	98.9974	47.5779	14122	56	14120	143	30	20.9790
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3003	99.8758	98.7314	36.7417	7238	9	7238	93	92	98.9247
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3002	99.9010	98.7065	40.6968	18165	18	18162	238	4	1.6807
ltrigg-rtg2	INDEL	D1_5	HG002complexvar	het	99.3002	99.0946	99.5066	51.3766	20577	188	20368	101	44	43.5644
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3000	98.9583	99.6441	61.5332	570	6	560	2	0	0.0000
astatham-gatk	SNP	tv	map_l150_m1_e0	homalt	99.2995	98.7836	99.8207	68.8894	3898	48	3898	7	5	71.4286

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