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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 211 212 213 214 215 216 217 218 219 ... 1720 1721 » 10701-10750 / 86044 show all
ltrigg-rtg1	INDEL	D1_5	func_cds	homalt	99.3197	98.6486	100.0000	23.1579	73	1	73	0	0
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3197	98.6486	100.0000	84.6046	438	6	438	0	0
eyeh-varpipe	SNP	*	segdup	hetalt	99.3197	100.0000	98.6486	95.3371	7	0	73	1	1	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3197	98.6486	100.0000	73.3087	438	6	434	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3197	98.6486	100.0000	84.5612	438	6	438	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3197	98.6486	100.0000	84.6316	438	6	438	0	0
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3197	98.9592	99.6829	37.2866	11314	119	11317	36	17	47.2222
ciseli-custom	SNP	ti	func_cds	homalt	99.3195	99.8483	98.7963	20.7719	5267	8	5253	64	29	45.3125
ndellapenna-hhga	SNP	ti	map_l250_m2_e1	homalt	99.3193	98.8149	99.8290	86.9124	1751	21	1751	3	3	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3191	99.1623	99.4764	77.1586	947	8	950	5	1	20.0000
jli-custom	SNP	ti	map_l100_m1_e0	het	99.3190	99.1250	99.5138	62.5391	29680	262	29678	145	38	26.2069
gduggal-bwafb	SNP	ti	HG002compoundhet	homalt	99.3188	99.5943	99.0449	33.6250	7364	30	7363	71	58	81.6901
ckim-isaac	SNP	tv	func_cds	het	99.3184	98.7204	99.9238	24.8927	2623	34	2623	2	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3181	99.2492	99.3870	72.2871	1322	10	1297	8	6	75.0000
astatham-gatk	INDEL	*	map_l125_m1_e0	homalt	99.3179	99.4536	99.1826	86.0562	728	4	728	6	4	66.6667
jli-custom	SNP	ti	map_l100_m2_e0	het	99.3179	99.1411	99.4953	64.3096	30359	263	30357	154	38	24.6753
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.3179	98.6450	100.0000	77.5032	364	5	355	0	0
hfeng-pmm3	INDEL	*	map_l125_m1_e0	homalt	99.3179	99.4536	99.1826	83.3974	728	4	728	6	3	50.0000
hfeng-pmm2	INDEL	*	map_l125_m1_e0	homalt	99.3179	99.4536	99.1826	84.3929	728	4	728	6	4	66.6667
jli-custom	SNP	*	map_l125_m1_e0	*	99.3178	99.0844	99.5522	66.7512	44912	415	44909	202	67	33.1683
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3176	99.3243	99.3109	72.4414	1323	9	1297	9	7	77.7778
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3173	99.3243	99.3103	72.7614	1323	9	1296	9	7	77.7778
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.3172	98.6436	100.0000	35.7535	2109	29	2106	0	0
ndellapenna-hhga	SNP	tv	map_siren	het	99.3169	98.8465	99.7918	55.1017	28279	330	28279	59	19	32.2034
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	*	99.3168	98.8481	99.7899	59.0336	48915	570	48917	103	29	28.1553
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3167	99.5384	99.0960	53.8093	6685	31	6687	61	11	18.0328
ghariani-varprowl	SNP	*	map_l100_m2_e0	homalt	99.3166	99.0008	99.6343	64.4739	27248	275	27248	100	67	67.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3163	99.4953	99.1379	64.1052	1380	7	1380	12	0	0.0000
ckim-dragen	SNP	*	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
ckim-dragen	SNP	tv	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
ghariani-varprowl	SNP	*	map_l100_m2_e1	homalt	99.3161	99.0071	99.6271	64.4501	27520	276	27520	103	68	66.0194
jpowers-varprowl	SNP	*	*	het	99.3161	99.3290	99.3033	25.1238	1861010	12572	1861335	13059	459	3.5148
hfeng-pmm3	SNP	ti	map_l150_m1_e0	het	99.3161	99.2158	99.4166	75.5923	12273	97	12269	72	8	11.1111
hfeng-pmm2	SNP	ti	map_l150_m2_e1	*	99.3155	99.4306	99.2007	77.6747	20605	118	20601	166	20	12.0482
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	*	99.3155	98.8275	99.8083	56.5736	47369	562	47371	91	27	29.6703
hfeng-pmm2	SNP	*	map_l100_m2_e0	het	99.3150	99.3793	99.2508	69.6789	46111	288	46100	348	28	8.0460
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3149	99.0149	99.6167	57.6636	55083	548	55098	212	134	63.2075
ltrigg-rtg1	INDEL	I1_5	*	*	99.3139	98.8385	99.7940	55.2555	148913	1750	148225	306	127	41.5033
hfeng-pmm2	SNP	*	map_l100_m1_e0	het	99.3136	99.3717	99.2555	68.4046	45074	285	45063	338	28	8.2840
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3136	99.0921	99.5361	73.0198	1528	14	1502	7	5	71.4286
ckim-dragen	SNP	ti	map_l250_m0_e0	homalt	99.3135	99.5413	99.0868	87.9769	434	2	434	4	3	75.0000
ltrigg-rtg1	SNP	ti	map_l100_m2_e0	*	99.3135	98.8379	99.7938	59.0138	48392	569	48394	100	29	29.0000
hfeng-pmm2	SNP	ti	map_l150_m2_e0	*	99.3133	99.4247	99.2021	77.6100	20394	118	20390	164	20	12.1951
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3133	98.8433	99.7877	85.1420	940	11	940	2	2	100.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3133	98.8433	99.7877	85.5411	940	11	940	2	2	100.0000
egarrison-hhga	SNP	tv	map_l100_m2_e1	het	99.3132	98.8894	99.7405	65.3943	15761	177	15761	41	13	31.7073
ltrigg-rtg1	INDEL	I1_5	*	het	99.3128	98.9158	99.7130	54.8506	78184	857	77471	223	56	25.1121
egarrison-hhga	SNP	tv	map_l100_m1_e0	het	99.3126	98.8649	99.7644	63.7472	15242	175	15242	36	13	36.1111
bgallagher-sentieon	SNP	ti	map_l250_m1_e0	homalt	99.3125	98.8799	99.7489	85.0633	1589	18	1589	4	3	75.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3123	98.9185	99.7093	62.6392	1372	15	1372	4	0	0.0000

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