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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10601-10650 / 86044 show all
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.3339
99.0472
99.6223
38.0132
73817173852818
64.2857
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3337
99.5146
99.1536
70.9926
820482071
14.2857
dgrover-gatkSNP*map_l125_m2_e1*
99.3336
99.3263
99.3409
74.2508
468843184687831169
22.1865
hfeng-pmm1SNP*map_l150_m1_e0*
99.3336
99.1016
99.5666
73.6726
303342753032813237
28.0303
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3336
98.6760
100.0000
74.6486
238532238100
hfeng-pmm1SNPtvmap_l150_m2_e1*
99.3334
99.1219
99.5459
75.2491
11401101113995214
26.9231
bgallagher-sentieonSNPtimap_l125_m2_e1*
99.3333
99.4373
99.2295
72.6907
303971723039323642
17.7966
gduggal-bwafbSNP*map_l125_m0_e0homalt
99.3333
98.7783
99.8945
72.5403
663082663076
85.7143
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.3332
99.5580
99.1095
50.6288
1036146103509384
90.3226
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3331
98.7166
99.9574
29.1176
469261468922
100.0000
hfeng-pmm3INDEL*segdup*
99.3329
99.0219
99.6459
93.8860
253125253393
33.3333
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3320
99.2657
99.3984
79.0065
148711148792
22.2222
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.3317
98.8017
99.8674
38.4766
1129613711293153
20.0000
hfeng-pmm3SNPtimap_l150_m2_e0het
99.3316
99.2392
99.4243
76.7413
127839812779748
10.8108
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.3316
99.5905
99.0741
54.4458
2675112675250
0.0000
astatham-gatkSNPtvmap_l150_m2_e1homalt
99.3315
98.8389
99.8290
71.2267
408648408675
71.4286
ckim-gatkINDEL*func_cds*
99.3314
99.7753
98.8914
54.2132
444144651
20.0000
jpowers-varprowlSNPtvHG002complexvarhet
99.3313
98.8748
99.7919
23.6187
149035169614915531160
19.2926
astatham-gatkSNP*map_l150_m1_e0homalt
99.3312
98.8113
99.8566
68.4753
11139134111391613
81.2500
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3312
99.2264
99.4362
88.4220
141111141187
87.5000
ltrigg-rtg1INDELD1_5map_l125_m2_e1homalt
99.3310
99.4624
99.2000
83.9812
370237232
66.6667
hfeng-pmm3SNPtimap_l150_m2_e1het
99.3308
99.2393
99.4225
76.8259
129169912912758
10.6667
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.3302
98.8571
99.8079
61.2435
103812103922
100.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3297
98.9174
99.7455
57.3296
1096412010972283
10.7143
hfeng-pmm1SNPtvmap_l150_m2_e0*
99.3292
99.1193
99.5400
75.2398
11255100112535214
26.9231
qzeng-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.3290
99.4275
99.2308
69.0660
521351644
100.0000
mlin-fermikitINDELD1_5func_cdshomalt
99.3289
100.0000
98.6667
21.0526
7407411
100.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3289
99.5281
99.1304
78.8666
4218204218376
16.2162
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
99.3289
100.0000
98.6667
70.3557
507411
100.0000
jli-customSNP*map_l125_m2_e0*
99.3286
99.1032
99.5549
68.8474
463044194630120767
32.3671
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3283
99.2191
99.4377
37.1644
18041142180381022
1.9608
bgallagher-sentieonSNPtimap_l125_m2_e0*
99.3281
99.4316
99.2249
72.6504
300861723008223542
17.8723
dgrover-gatkSNP*map_l125_m2_e0*
99.3279
99.3194
99.3363
74.2156
464053184639931069
22.2581
hfeng-pmm2SNPtimap_l100_m0_e0*
99.3277
99.4212
99.2343
69.9178
216451262164216719
11.3772
rpoplin-dv42SNP*map_l150_m1_e0homalt
99.3277
98.9444
99.7139
71.2907
11154119111543231
96.8750
bgallagher-sentieonSNP*map_l250_m2_e0homalt
99.3276
98.9948
99.6627
86.1668
265927265997
77.7778
gduggal-snapplatSNP*func_cdshet
99.3276
99.2653
99.3900
36.7079
110798211079684
5.8824
ckim-gatkINDEL*HG002complexvar*
99.3276
99.0226
99.6345
58.1713
7618675276048279226
81.0036
gduggal-bwafbINDELI1_5map_l100_m1_e0homalt
99.3276
99.8069
98.8528
81.3813
517151764
66.6667
ckim-vqsrINDELD1_5map_l125_m2_e1homalt
99.3271
99.1935
99.4609
86.4599
369336922
100.0000
ckim-gatkINDELD1_5map_l125_m2_e1homalt
99.3271
99.1935
99.4609
86.4599
369336922
100.0000
jli-customINDELD1_5map_l125_m2_e1homalt
99.3271
99.1935
99.4609
85.1719
369336922
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.3270
99.3199
99.3340
66.8350
3067213132219
42.8571
ndellapenna-hhgaSNP*map_l250_m2_e0homalt
99.3266
98.8459
99.8120
86.8985
265531265555
100.0000
rpoplin-dv42INDELD1_5map_l100_m1_e0homalt
99.3266
99.6622
98.9933
82.4396
590259065
83.3333
jmaeng-gatkINDELI1_5map_l100_m1_e0homalt
99.3263
99.6139
99.0403
80.7962
516251654
80.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.3263
98.8086
99.8495
53.5477
265432265440
0.0000
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.3263
98.9377
99.7181
59.8869
10990118109643112
38.7097
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3262
99.0514
99.6025
88.3465
125312125355
100.0000
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3259
98.9526
99.7019
63.0961
17384184173915220
38.4615