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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 204 205 206 207 208 209 210 211 212 ... 1720 1721 » 10351-10400 / 86044 show all
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3623	98.8621	99.8675	43.6567	2259	26	2262	3	0	0.0000
eyeh-varpipe	SNP	tv	*	hetalt	99.3621	99.8852	98.8445	45.4641	870	1	4106	48	46	95.8333
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3619	99.0333	99.6927	53.9179	3893	38	3893	12	0	0.0000
bgallagher-sentieon	INDEL	*	map_siren	homalt	99.3618	99.5480	99.1763	81.3504	2643	12	2649	22	13	59.0909
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.3617	99.6215	99.1032	69.4732	45529	173	45529	412	31	7.5243
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.3617	99.6215	99.1032	69.4732	45529	173	45529	412	31	7.5243
eyeh-varpipe	SNP	ti	map_l100_m1_e0	*	99.3616	99.7163	99.0095	67.2794	47795	136	46883	469	32	6.8230
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3616	98.9595	99.7670	33.2686	1712	18	1713	4	3	75.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.3614	99.3623	99.3605	44.2283	3428	22	3418	22	3	13.6364
jmaeng-gatk	INDEL	D6_15	HG002complexvar	homalt	99.3614	99.8289	98.8983	63.0673	1167	2	1167	13	12	92.3077
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.3614	98.7310	100.0000	27.9729	1167	15	1169	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3613	98.9539	99.7720	65.8757	3500	37	3501	8	5	62.5000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3613	99.1592	99.5643	51.5120	3656	31	3656	16	13	81.2500
hfeng-pmm3	SNP	ti	map_l125_m0_e0	*	99.3611	99.3183	99.4039	74.1190	12675	87	12673	76	11	14.4737
hfeng-pmm2	INDEL	*	map_siren	homalt	99.3610	99.4350	99.2871	79.4763	2640	15	2646	19	12	63.1579
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3610	99.0730	99.6508	61.9238	855	8	856	3	2	66.6667
hfeng-pmm3	SNP	tv	map_l250_m2_e0	homalt	99.3610	99.5731	99.1498	88.0265	933	4	933	8	4	50.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	*	99.3609	98.9413	99.7840	74.9205	31869	341	31869	69	32	46.3768
jli-custom	INDEL	*	map_siren	homalt	99.3607	99.4350	99.2865	79.8135	2640	15	2644	19	11	57.8947
jlack-gatk	SNP	tv	*	het	99.3606	99.9332	98.7945	31.3268	591301	395	591230	7214	153	2.1209
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.3604	98.8187	99.9081	42.3617	2175	26	2175	2	2	100.0000
raldana-dualsentieon	INDEL	*	map_siren	homalt	99.3604	99.3597	99.3611	79.7735	2638	17	2644	17	11	64.7059
cchapple-custom	INDEL	D1_5	HG002complexvar	het	99.3604	99.0657	99.6568	53.2015	20571	194	21196	73	60	82.1918
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3603	99.2881	99.4326	81.7523	6834	49	6834	39	15	38.4615
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	*	99.3603	99.6045	99.1174	68.4796	24934	99	24930	222	31	13.9640
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3600	99.0514	99.6705	83.4424	1253	12	1210	4	0	0.0000
ckim-vqsr	INDEL	*	map_siren	homalt	99.3599	99.2844	99.4355	81.7137	2636	19	2642	15	8	53.3333
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3599	98.9071	99.8168	81.2629	543	6	545	1	0	0.0000
astatham-gatk	SNP	ti	map_l150_m2_e0	homalt	99.3599	98.8445	99.8806	70.6148	7528	88	7528	9	8	88.8889
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3594	99.1723	99.5472	71.1298	2636	22	2638	12	6	50.0000
hfeng-pmm3	SNP	tv	map_l250_m1_e0	homalt	99.3593	99.6495	99.0708	87.1531	853	3	853	8	4	50.0000
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3593	99.4891	99.2298	79.0524	3895	20	3865	30	20	66.6667
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3592	99.0869	99.6329	31.6608	2713	25	2714	10	1	10.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3592	98.7265	100.0000	55.4162	3411	44	3412	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3592	98.9362	99.7859	69.6359	465	5	466	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3590	100.0000	98.7261	85.0476	155	0	155	2	0	0.0000
hfeng-pmm1	SNP	*	tech_badpromoters	*	99.3590	98.7261	100.0000	46.3668	155	2	155	0	0
hfeng-pmm3	SNP	*	tech_badpromoters	*	99.3590	98.7261	100.0000	45.9930	155	2	155	0	0
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3590	98.9362	99.7854	67.0205	465	5	465	1	1	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3589	99.2443	99.4737	85.1185	788	6	756	4	0	0.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3587	99.9407	98.7835	42.3002	6740	4	6740	83	1	1.2048
ckim-gatk	INDEL	I6_15	HG002complexvar	het	99.3586	98.9384	99.7824	59.6346	2330	25	2293	5	4	80.0000
raldana-dualsentieon	SNP	*	map_l100_m1_e0	*	99.3579	99.3895	99.3263	63.6563	71961	442	71950	488	23	4.7131
ndellapenna-hhga	SNP	*	HG002compoundhet	hetalt	99.3579	98.7239	100.0000	23.5400	851	11	851	0	0
ndellapenna-hhga	SNP	tv	HG002compoundhet	hetalt	99.3579	98.7239	100.0000	23.5400	851	11	851	0	0
ckim-vqsr	INDEL	I1_5	*	*	99.3579	99.0515	99.6662	59.3791	149235	1429	149282	500	397	79.4000
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	*	99.3576	98.8807	99.8392	63.3838	48413	548	48415	78	40	51.2821
hfeng-pmm3	SNP	tv	map_l125_m1_e0	het	99.3576	99.2988	99.4165	70.9308	10055	71	10053	59	5	8.4746
jli-custom	SNP	ti	map_l125_m1_e0	*	99.3574	99.1001	99.6162	66.6526	29071	264	29069	112	41	36.6071
jmaeng-gatk	INDEL	D1_5	map_siren	homalt	99.3571	99.1438	99.5712	81.3141	1158	10	1161	5	5	100.0000

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