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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 202 203 204 205 206 207 208 209 210 ... 1720 1721 » 10251-10300 / 86044 show all
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3742	99.4987	99.2500	65.9284	397	2	397	3	2	66.6667
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3742	98.8879	99.8652	37.8733	6669	75	6669	9	0	0.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3742	99.4987	99.2500	62.1212	397	2	397	3	2	66.6667
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3741	98.7559	100.0000	56.8481	1667	21	1673	0	0
ckim-vqsr	INDEL	I1_5	HG002complexvar	*	99.3737	98.9030	99.8489	56.8918	32997	366	33042	50	41	82.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3736	99.2639	99.4836	88.1512	2697	20	2697	14	13	92.8571
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3735	99.2041	99.5436	81.7204	4113	33	4144	19	8	42.1053
hfeng-pmm3	SNP	ti	map_l100_m0_e0	het	99.3735	99.2634	99.4838	69.6444	13880	103	13877	72	7	9.7222
dgrover-gatk	SNP	ti	map_l125_m2_e0	*	99.3734	99.3258	99.4210	73.9134	30054	204	30050	175	42	24.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3731	99.4054	99.3408	76.0979	47984	287	47771	317	259	81.7035
ltrigg-rtg2	INDEL	D1_5	func_cds	*	99.3730	99.3711	99.3750	31.0345	158	1	159	1	0	0.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3727	99.4055	99.3399	88.6347	1505	9	1505	10	9	90.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3726	99.0232	99.7245	73.4687	5069	50	5067	14	4	28.5714
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.3724	98.7526	100.0000	45.7143	475	6	475	0	0
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3723	99.3395	99.4052	88.3238	1504	10	1504	9	9	100.0000
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3721	99.2620	99.4824	48.6065	4035	30	4036	21	4	19.0476
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.3720	99.3348	99.4092	74.3463	1344	9	1346	8	3	37.5000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3720	99.7481	98.9987	88.0853	792	2	791	8	6	75.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3719	99.3026	99.4413	55.9656	712	5	712	4	3	75.0000
hfeng-pmm3	SNP	tv	map_l150_m1_e0	*	99.3718	99.3127	99.4310	74.1360	10837	75	10835	62	9	14.5161
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3717	99.3717	99.3717	79.9201	949	6	949	6	5	83.3333
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3716	99.1196	99.6249	78.0612	1351	12	1328	5	3	60.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3716	99.1196	99.6249	77.6829	1351	12	1328	5	3	60.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3711	98.9975	99.7475	60.5184	395	4	395	1	1	100.0000
jlack-gatk	SNP	*	tech_badpromoters	homalt	99.3711	98.7500	100.0000	48.0263	79	1	79	0	0
ltrigg-rtg1	SNP	*	tech_badpromoters	homalt	99.3711	98.7500	100.0000	48.7013	79	1	79	0	0
jli-custom	SNP	ti	map_l125_m2_e1	*	99.3704	99.1266	99.6153	68.7864	30302	267	30300	117	41	35.0427
gduggal-bwavard	SNP	ti	func_cds	*	99.3703	99.0716	99.6707	28.1478	13659	128	13622	45	15	33.3333
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3703	99.3703	99.3703	89.2862	789	5	789	5	5	100.0000
gduggal-snapplat	SNP	*	*	homalt	99.3703	98.8374	99.9089	19.1469	1166442	13720	1166214	1063	359	33.7723
rpoplin-dv42	SNP	ti	map_l150_m1_e0	homalt	99.3702	99.0583	99.6841	71.0853	7258	69	7258	23	22	95.6522
dgrover-gatk	SNP	*	map_l100_m2_e0	het	99.3701	99.4698	99.2707	71.6313	46153	246	46142	339	63	18.5841
raldana-dualsentieon	SNP	tv	map_siren	het	99.3697	99.4827	99.2570	59.7589	28461	148	28456	213	2	0.9390
raldana-dualsentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3694	98.9198	99.8231	52.8249	27657	302	27656	49	9	18.3673
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3694	99.5142	99.2251	69.4063	3073	15	3073	24	12	50.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3694	98.9529	99.7895	80.5964	945	10	948	2	1	50.0000
egarrison-hhga	SNP	*	map_l100_m2_e1	het	99.3694	98.9552	99.7871	65.4429	46408	490	46409	99	31	31.3131
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.3693	98.9623	99.7797	53.9086	1812	19	1812	4	0	0.0000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.3692	98.9653	99.7765	72.8230	1339	14	1339	3	1	33.3333
cchapple-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3690	99.6782	99.0618	71.6714	30662	99	30621	290	283	97.5862
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3687	98.9523	99.7887	50.3034	4250	45	4250	9	0	0.0000
ndellapenna-hhga	SNP	ti	map_siren	het	99.3687	98.9067	99.8350	52.2716	61700	682	61701	102	39	38.2353
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	homalt	99.3685	98.9708	99.7695	86.1400	1731	18	1731	4	3	75.0000
ndellapenna-hhga	INDEL	I1_5	segdup	homalt	99.3684	99.7886	98.9518	92.7375	472	1	472	5	5	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3684	98.7448	100.0000	70.7210	472	6	467	0	0
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3683	98.8824	99.8589	49.4773	4247	48	4247	6	0	0.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3679	99.4491	99.2868	52.6423	6679	37	6682	48	39	81.2500
egarrison-hhga	SNP	ti	map_l100_m0_e0	*	99.3678	98.9068	99.8331	66.9886	21533	238	21534	36	20	55.5556
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3676	99.3641	99.3711	65.4796	27502	176	27492	174	18	10.3448
jli-custom	INDEL	*	*	*	99.3675	99.0788	99.6580	57.6935	341368	3174	341213	1171	951	81.2126

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