PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10151-10200 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 91.1281 | 81 | 1 | 81 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 90.8989 | 81 | 1 | 81 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 92.0354 | 81 | 1 | 81 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | hetalt | 99.3865 | 100.0000 | 98.7805 | 70.8703 | 42 | 0 | 162 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 87.6755 | 81 | 1 | 79 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3863 | 99.1243 | 99.6497 | 55.8050 | 566 | 5 | 569 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3862 | 99.1554 | 99.6182 | 87.6455 | 2348 | 20 | 2348 | 9 | 8 | 88.8889 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3861 | 99.7540 | 99.0208 | 56.4034 | 2433 | 6 | 2427 | 24 | 3 | 12.5000 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.3858 | 98.8816 | 99.8952 | 58.5121 | 26701 | 302 | 26701 | 28 | 22 | 78.5714 | |
| ghariani-varprowl | SNP | tv | HG002complexvar | homalt | 99.3856 | 99.9338 | 98.8434 | 25.4168 | 95048 | 63 | 95121 | 1113 | 736 | 66.1276 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3854 | 100.0000 | 98.7784 | 71.6337 | 564 | 0 | 566 | 7 | 7 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | * | homalt | 99.3853 | 99.6838 | 99.0886 | 51.6854 | 6306 | 20 | 6306 | 58 | 54 | 93.1034 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | het | 99.3853 | 99.2028 | 99.5685 | 52.2881 | 18044 | 145 | 17305 | 75 | 44 | 58.6667 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3852 | 99.0251 | 99.7479 | 54.5094 | 14626 | 144 | 14641 | 37 | 15 | 40.5405 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3846 | 99.0826 | 99.6885 | 78.7135 | 324 | 3 | 320 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.3846 | 99.2919 | 99.4776 | 66.9410 | 3225 | 23 | 3237 | 17 | 3 | 17.6471 | |
| hfeng-pmm3 | INDEL | D6_15 | * | homalt | 99.3845 | 99.5416 | 99.2279 | 50.7795 | 6297 | 29 | 6297 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | * | segdup | het | 99.3844 | 99.1132 | 99.6571 | 94.2790 | 1453 | 13 | 1453 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | homalt | 99.3844 | 98.8644 | 99.9100 | 71.6564 | 4440 | 51 | 4440 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | homalt | 99.3843 | 98.8697 | 99.9044 | 57.5961 | 17757 | 203 | 17757 | 17 | 15 | 88.2353 | |
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3840 | 98.8562 | 99.9174 | 59.5119 | 1210 | 14 | 1210 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | tv | segdup | homalt | 99.3840 | 99.6603 | 99.1093 | 91.8109 | 3227 | 11 | 3227 | 29 | 8 | 27.5862 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3838 | 98.8184 | 99.9558 | 47.5296 | 2258 | 27 | 2261 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | het | 99.3837 | 99.3272 | 99.4402 | 72.3386 | 10482 | 71 | 10480 | 59 | 5 | 8.4746 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3837 | 99.3515 | 99.4160 | 78.0297 | 1532 | 10 | 1532 | 9 | 5 | 55.5556 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3833 | 100.0000 | 98.7741 | 72.8095 | 564 | 0 | 564 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | * | map_l250_m2_e0 | homalt | 99.3833 | 98.9948 | 99.7749 | 85.5202 | 2659 | 27 | 2659 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3832 | 98.7739 | 100.0000 | 75.8608 | 3867 | 48 | 3884 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3832 | 99.0868 | 99.6813 | 36.6712 | 10634 | 98 | 10635 | 34 | 19 | 55.8824 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3829 | 99.4334 | 99.3324 | 81.4625 | 6844 | 39 | 6844 | 46 | 14 | 30.4348 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3827 | 98.8452 | 99.9260 | 60.8128 | 10785 | 126 | 10801 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | I1_5 | map_siren | homalt | 99.3823 | 99.4224 | 99.3421 | 78.6217 | 1205 | 7 | 1208 | 8 | 5 | 62.5000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3822 | 99.3056 | 99.4590 | 87.2487 | 1287 | 9 | 1287 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3822 | 99.8227 | 98.9455 | 72.2032 | 563 | 1 | 563 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | * | 99.3819 | 99.4704 | 99.2936 | 73.5231 | 46952 | 250 | 46946 | 334 | 39 | 11.6766 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3819 | 99.8008 | 98.9665 | 67.1777 | 17533 | 35 | 17523 | 183 | 15 | 8.1967 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3818 | 99.2284 | 99.5356 | 87.4927 | 1286 | 10 | 1286 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | * | 99.3818 | 99.0798 | 99.6856 | 52.9504 | 33055 | 307 | 32342 | 102 | 66 | 64.7059 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3817 | 99.0272 | 99.7387 | 76.7007 | 1527 | 15 | 1527 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3814 | 99.5868 | 99.1770 | 86.5150 | 241 | 1 | 241 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3814 | 98.9733 | 99.7930 | 65.0253 | 482 | 5 | 482 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | homalt | 99.3814 | 99.4224 | 99.3405 | 78.4317 | 1205 | 7 | 1205 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | D1_5 | * | * | 99.3810 | 99.3322 | 99.4300 | 61.6387 | 145765 | 980 | 145820 | 836 | 338 | 40.4306 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | homalt | 99.3810 | 99.0809 | 99.6830 | 73.3835 | 7546 | 70 | 7546 | 24 | 23 | 95.8333 | |
| jpowers-varprowl | SNP | * | func_cds | * | 99.3809 | 99.4931 | 99.2689 | 29.1793 | 18058 | 92 | 18058 | 133 | 14 | 10.5263 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3809 | 98.8975 | 99.8690 | 76.5041 | 1525 | 17 | 1525 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | * | HG002complexvar | het | 99.3807 | 99.2967 | 99.4647 | 57.6016 | 45887 | 325 | 45527 | 245 | 124 | 50.6122 | |
| ckim-dragen | SNP | ti | func_cds | het | 99.3804 | 99.9647 | 98.8029 | 32.2466 | 8501 | 3 | 8501 | 103 | 1 | 0.9709 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3799 | 99.5525 | 99.2079 | 75.4457 | 48055 | 216 | 47847 | 382 | 297 | 77.7487 | |