PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 198 199 200 201 202 203 204 205 206 ... 1720 1721 » 10051-10100 / 86044 show all
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3998	98.8910	99.9138	41.4542	4637	52	4634	4	1	25.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3995	99.6241	99.1760	40.3752	1325	5	1324	11	11	100.0000
gduggal-bwafb	SNP	ti	map_l150_m2_e1	homalt	99.3993	98.9471	99.8557	74.6736	7612	81	7612	11	6	54.5455
gduggal-bwafb	SNP	tv	map_l100_m0_e0	homalt	99.3993	98.9600	99.8426	67.1804	3806	40	3806	6	4	66.6667
hfeng-pmm1	SNP	*	map_l100_m0_e0	*	99.3989	99.1931	99.6055	67.8013	32576	265	32572	129	37	28.6822
hfeng-pmm1	SNP	ti	map_l100_m2_e0	het	99.3987	99.0660	99.7336	64.8032	30336	286	30329	81	20	24.6914
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3987	98.9438	99.8577	44.3311	5621	60	5614	8	8	100.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3985	98.9521	99.8489	49.8485	1322	14	1322	2	0	0.0000
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3985	99.2535	99.5440	74.5809	63950	481	63963	293	257	87.7133
gduggal-bwafb	SNP	*	func_cds	het	99.3985	99.9462	98.8568	33.7832	11155	6	11155	129	2	1.5504
egarrison-hhga	SNP	ti	map_l100_m2_e1	het	99.3984	98.9890	99.8111	65.4651	30647	313	30648	58	18	31.0345
raldana-dualsentieon	SNP	tv	map_l100_m1_e0	*	99.3984	99.4735	99.3234	65.0677	24372	129	24368	166	5	3.0121
rpoplin-dv42	SNP	*	map_l100_m1_e0	*	99.3983	99.2625	99.5346	63.1596	71869	534	71858	336	196	58.3333
jlack-gatk	INDEL	D1_5	map_siren	homalt	99.3983	98.9726	99.8277	79.2900	1156	12	1159	2	2	100.0000
egarrison-hhga	SNP	tv	map_l125_m1_e0	*	99.3983	99.0135	99.7861	68.1855	15858	158	15858	34	17	50.0000
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3981	99.0572	99.7414	71.0854	30471	290	30469	79	73	92.4051
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3981	98.9726	99.8273	17.0487	578	6	578	1	1	100.0000
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3981	98.8035	100.0000	36.3869	2725	33	2729	0	0
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e1	homalt	99.3980	99.5968	99.2000	86.4352	247	1	248	2	2	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3977	98.8829	99.9179	55.5579	14605	165	14609	12	3	25.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3976	98.8024	100.0000	50.1134	1320	16	1320	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3976	99.2333	99.5624	89.0421	906	7	910	4	4	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3974	99.2449	99.5503	79.5805	4206	32	4206	19	5	26.3158
ckim-gatk	SNP	*	HG002compoundhet	*	99.3973	99.0009	99.7970	41.7198	25564	258	25561	52	38	73.0769
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3973	99.2341	99.5609	67.8773	907	7	907	4	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3971	98.8014	100.0000	18.5915	577	7	578	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3971	98.8014	100.0000	18.5915	577	7	578	0	0
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3971	98.8014	100.0000	18.3616	577	7	578	0	0
jlack-gatk	SNP	*	map_l100_m2_e1	homalt	99.3962	98.8991	99.8982	60.9989	27490	306	27490	28	22	78.5714
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.3962	98.9698	99.8262	37.7685	4035	42	4020	7	2	28.5714
gduggal-bwaplat	SNP	tv	func_cds	het	99.3960	99.0967	99.6971	49.3090	2633	24	2633	8	0	0.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3959	99.1682	99.6246	82.9296	2623	22	2654	10	6	60.0000
gduggal-snapplat	SNP	tv	segdup	homalt	99.3958	99.0735	99.7201	90.1395	3208	30	3207	9	7	77.7778
jlack-gatk	SNP	*	map_l100_m2_e0	homalt	99.3957	98.8991	99.8972	61.0320	27220	303	27220	28	22	78.5714
hfeng-pmm3	SNP	tv	map_l150_m2_e1	*	99.3954	99.3479	99.4429	75.5927	11427	75	11425	64	9	14.0625
hfeng-pmm1	SNP	ti	map_l100_m1_e0	het	99.3951	99.0615	99.7309	63.4093	29661	281	29654	80	20	25.0000
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3951	99.8402	98.9540	76.8921	21864	35	21853	231	230	99.5671
bgallagher-sentieon	INDEL	I16_PLUS	HG002complexvar	het	99.3949	98.7970	100.0000	64.2575	657	8	633	0	0
dgrover-gatk	INDEL	I16_PLUS	HG002complexvar	het	99.3949	98.7970	100.0000	64.8333	657	8	633	0	0
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3948	99.8304	98.9630	72.1359	3531	6	3531	37	37	100.0000
jpowers-varprowl	SNP	*	HG002complexvar	het	99.3948	98.9553	99.8382	20.0313	460632	4863	460862	747	150	20.0803
ckim-dragen	INDEL	*	HG002complexvar	*	99.3944	99.2565	99.5327	58.0987	76366	572	76037	357	301	84.3137
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.3944	99.6258	99.1640	40.2940	2130	8	2135	18	5	27.7778
gduggal-snapplat	SNP	ti	func_cds	het	99.3942	99.3532	99.4351	33.3621	8449	55	8449	48	4	8.3333
egarrison-hhga	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	92.1830	82	1	82	0	0
dgrover-gatk	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	93.9394	82	1	82	0	0
hfeng-pmm3	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	92.6060	82	1	82	0	0
hfeng-pmm2	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	93.5280	82	1	82	0	0
raldana-dualsentieon	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	91.6836	82	1	82	0	0
ndellapenna-hhga	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	92.8007	82	1	82	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge