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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10001-10050 / 86044 show all
egarrison-hhgaSNPtvmap_l125_m2_e0*
99.4065
99.0357
99.7800
70.1050
16330159163303617
47.2222
egarrison-hhgaSNPtvmap_l125_m2_e1*
99.4064
99.0334
99.7822
70.1626
16496161164963617
47.2222
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4064
99.1978
99.6159
41.7997
7296597261286
21.4286
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4064
99.2885
99.5246
88.1335
12569125666
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.4061
98.8192
100.0000
47.1948
401748401900
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2868
502550211
100.0000
jlack-gatkSNPtvmap_l100_m2_e1homalt
99.4059
98.9357
99.8806
62.6933
9203999203117
63.6364
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4311
502550210
0.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4347
502550211
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4059
99.4716
99.3404
88.6280
150681506109
90.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4059
99.3368
99.4750
48.7096
1003567100435344
83.0189
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4057
99.7831
99.0312
77.4842
920292096
66.6667
gduggal-bwafbSNP*map_l150_m2_e1homalt
99.4055
98.9685
99.8465
74.9037
11705122117051811
61.1111
raldana-dualsentieonSNPtvmap_l100_m2_e0*
99.4052
99.4847
99.3259
66.9200
24904129249001695
2.9586
raldana-dualsentieonSNPtvmap_l100_m2_e1*
99.4052
99.4898
99.3207
66.9624
25154129251501725
2.9070
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4050
99.7685
99.0441
61.4043
35337823533334120
5.8651
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4050
99.1319
99.6795
63.7841
571562222
100.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4048
98.8166
100.0000
87.0810
501650100
dgrover-gatkINDELD6_15HG002complexvarhomalt
99.4048
100.0000
98.8166
62.8338
1169011691414
100.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4045
98.9789
99.8338
50.4652
6010626006105
50.0000
egarrison-hhgaSNPtvsegduphet
99.4044
99.4326
99.3762
90.4305
5257305257332
6.0606
dgrover-gatkSNPtimap_l100_m2_e0het
99.4042
99.4416
99.3668
70.9135
304511713044419439
20.1031
hfeng-pmm1SNPtimap_l100_m0_e0*
99.4038
99.1778
99.6308
67.2084
21592179215898022
27.5000
hfeng-pmm1SNPtimap_l100_m2_e1het
99.4037
99.0762
99.7333
64.8020
30674286306678220
24.3902
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4037
99.7908
99.0196
71.3644
477150552
40.0000
gduggal-bwafbSNP*map_l150_m2_e0homalt
99.4033
98.9657
99.8448
74.8531
11578121115781811
61.1111
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4032
98.9855
99.8245
35.5338
341535341262
33.3333
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.4030
99.1198
99.6877
55.5385
14640130150054723
48.9362
ltrigg-rtg1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4029
99.5574
99.2487
52.2265
1777279178351357
5.1852
gduggal-bwaplatSNPtvfunc_cds*
99.4027
98.9934
99.8155
42.5143
432744432780
0.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.4025
98.8681
99.9427
55.9677
174720174410
0.0000
gduggal-bwafbSNPtvmap_l150_m1_e0homalt
99.4020
98.9863
99.8211
73.3556
390640390675
71.4286
ltrigg-rtg1INDEL*HG002complexvarhomalt
99.4013
98.9677
99.8388
52.4987
26747279266294332
74.4186
raldana-dualsentieonSNP*segduphet
99.4013
99.7344
99.0704
90.7424
1727146172651621
0.6173
rpoplin-dv42SNPti*hetalt
99.4012
99.8282
98.9779
50.2542
581158166
100.0000
eyeh-varpipeSNPtvmap_l100_m2_e1hetalt
99.4012
100.0000
98.8095
70.6294
43016621
50.0000
ckim-dragenINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.4012
98.8095
100.0000
80.3121
166216400
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4012
99.2823
99.5204
47.6788
415341521
50.0000
egarrison-hhgaINDELD1_5map_sirenhomalt
99.4012
99.4863
99.3162
80.2231
11626116287
87.5000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.4011
99.6723
99.1314
60.3701
182561826161
6.2500
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4006
99.5116
99.2899
63.6333
352461733523525221
8.3333
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4006
99.1437
99.6587
62.2119
27441237274499460
63.8298
hfeng-pmm3INDELI1_5map_siren*
99.4006
99.2346
99.5672
79.0750
2982232991133
23.0769
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4003
99.3113
99.4894
56.4059
66334666253432
94.1176
jlack-gatkSNPtvmap_l100_m2_e0homalt
99.4002
98.9255
99.8795
62.7206
9115999115117
63.6364
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4000
99.1045
99.6973
59.5840
996998831
33.3333
gduggal-bwafbSNPtimap_l150_m2_e0homalt
99.3999
98.9496
99.8542
74.6089
7536807536116
54.5455