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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9951-10000 / 86044 show all
egarrison-hhgaSNPtvmap_l250_m1_e0homalt
99.4138
99.0654
99.7647
86.4065
848884822
100.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.4136
99.6124
99.2157
53.4672
257125322
100.0000
rpoplin-dv42INDELI1_5map_l125_m2_e0homalt
99.4135
99.4135
99.4135
84.6119
339233921
50.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.4131
99.5300
99.2966
88.5687
847484766
100.0000
hfeng-pmm3SNP*map_l125_m1_e0het
99.4129
99.3132
99.5129
70.9946
281971952819113813
9.4203
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4129
99.0178
99.8112
75.1670
211721211541
25.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.4125
98.9911
99.8375
43.7900
245325245841
25.0000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4124
99.3179
99.5070
45.2160
145610141372
28.5714
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.4122
99.6041
99.2209
44.4011
1031641103168179
97.5309
gduggal-snapvardSNPtv*homalt
99.4119
98.9054
99.9237
19.2463
3729954128370593283154
54.4170
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4119
99.4624
99.3614
80.8398
68463768464411
25.0000
raldana-dualsentieonSNPtisegduphet
99.4118
99.7672
99.0589
90.1934
1200228120001141
0.8772
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.4116
99.0616
99.7639
37.2813
4645444649115
45.4545
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4113
99.1196
99.7048
77.3525
135112135142
50.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4113
99.1196
99.7048
77.3525
135112135142
50.0000
gduggal-bwaplatSNPtifunc_cdshet
99.4112
99.2709
99.5519
36.3268
8442628442384
10.5263
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4112
98.9838
99.8424
34.1207
506552506888
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_11to50*
99.4110
99.2557
99.5668
65.5731
4801364827213
14.2857
ltrigg-rtg2INDEL*HG002complexvarhomalt
99.4106
98.9640
99.8613
51.7784
26746280266313727
72.9730
hfeng-pmm2SNPtimap_l125_m1_e0*
99.4105
99.4648
99.3563
71.7136
291781572917418923
12.1693
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4104
99.4573
99.3635
79.6751
4215234215278
29.6296
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4104
99.5294
99.2916
44.4954
846484166
100.0000
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4099
99.4850
99.3350
55.8574
100455294106321
33.3333
gduggal-bwafbSNPtvmap_l150_m2_e0homalt
99.4097
98.9958
99.8271
75.2959
404241404275
71.4286
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4096
99.6175
99.2025
47.1436
83343283346766
98.5075
rpoplin-dv42SNP*map_l100_m2_e1*
99.4091
99.2775
99.5411
65.1919
7419754074186342199
58.1871
dgrover-gatkSNPtimap_l100_m2_e1het
99.4091
99.4477
99.3705
70.9092
307891713078219539
20.0000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4090
99.1601
99.6591
54.8028
25146213251448660
69.7674
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4089
99.5877
99.2308
76.0442
4807219947859371265
71.4286
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.4087
100.0000
98.8243
35.3599
1427014291710
58.8235
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
99.4085
99.1930
99.6249
78.2367
135211132853
60.0000
gduggal-snapfbSNPtvfunc_cds*
99.4084
99.9542
98.8685
34.6495
436924369500
0.0000
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
99.4083
98.8235
100.0000
57.0707
8418500
hfeng-pmm1SNPtitech_badpromoters*
99.4083
98.8235
100.0000
43.2432
8418400
hfeng-pmm3SNPtitech_badpromoters*
99.4083
98.8235
100.0000
43.2432
8418400
qzeng-customSNPtitech_badpromoters*
99.4083
100.0000
98.8235
44.4444
8508410
0.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
99.4083
98.8235
100.0000
57.0707
8418500
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4081
99.2523
99.5645
82.9173
4115314115188
44.4444
ltrigg-rtg1SNPtvfunc_cds*
99.4080
99.8856
98.9350
27.2263
436654366470
0.0000
jli-customSNP*segduphet
99.4076
99.8037
99.0146
89.8653
1728334172831722
1.1628
gduggal-bwaplatSNP*func_cdshet
99.4076
99.2295
99.5864
39.9773
110758611075464
8.6957
dgrover-gatkSNPtimap_l125_m0_e0homalt
99.4074
98.9757
99.8428
67.2382
444546444575
71.4286
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
dgrover-gatkINDELD1_5map_l100_m1_e0homalt
99.4073
99.1554
99.6604
83.4225
587558722
100.0000
cchapple-customINDEL*HG002complexvarhomalt
99.4073
99.4302
99.3845
51.9433
2687315426641165156
94.5455
ltrigg-rtg2SNPtvmap_siren*
99.4071
99.1030
99.7130
49.8109
45518412455171319
6.8702
rpoplin-dv42SNP*map_l100_m2_e0*
99.4070
99.2740
99.5404
65.1757
7342753773416339198
58.4071
jlack-gatkINDELD1_5HG002complexvar*
99.4067
99.2878
99.5259
58.0276
324822333253915592
59.3548
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4066
99.4274
99.3858
50.7439
1180768118127323
31.5068