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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 194 195 196 197 198 199 200 201 202 ... 1720 1721 » 9851-9900 / 86044 show all
cchapple-custom	SNP	*	segdup	het	99.4246	99.7863	99.0654	93.2744	17280	37	17278	163	5	3.0675
hfeng-pmm2	SNP	ti	map_l125_m2_e1	*	99.4245	99.4799	99.3693	73.2743	30410	159	30406	193	23	11.9171
astatham-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4245	98.9414	99.9124	64.7733	27385	293	27376	24	14	58.3333
hfeng-pmm1	INDEL	*	*	het	99.4245	99.1923	99.6578	58.3471	192565	1568	192194	660	374	56.6667
hfeng-pmm1	INDEL	I1_5	map_l100_m1_e0	homalt	99.4242	100.0000	98.8550	79.6188	518	0	518	6	4	66.6667
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4242	99.5483	99.3004	56.7770	35259	160	35343	249	16	6.4257
qzeng-custom	SNP	*	*	het	99.4239	99.1899	99.6590	25.4299	1858423	15178	1850061	6331	818	12.9205
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4235	99.0875	99.7618	50.0170	2932	27	2932	7	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4232	99.6886	99.1593	46.1734	6723	21	6723	57	1	1.7544
ckim-gatk	INDEL	I1_5	map_l100_m1_e0	homalt	99.4231	99.8069	99.0421	81.1416	517	1	517	5	4	80.0000
dgrover-gatk	INDEL	I1_5	map_l100_m1_e0	homalt	99.4231	99.8069	99.0421	80.9489	517	1	517	5	4	80.0000
dgrover-gatk	INDEL	I6_15	HG002complexvar	het	99.4230	99.0658	99.7827	59.6952	2333	22	2296	5	4	80.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4228	99.8304	99.0185	72.8574	3531	6	3531	35	34	97.1429
hfeng-pmm1	SNP	*	map_l100_m2_e0	het	99.4228	99.1250	99.7224	65.3363	45993	406	45982	128	32	25.0000
bgallagher-sentieon	INDEL	I1_5	*	*	99.4227	99.2586	99.5873	58.2134	149547	1117	149597	620	500	80.6452
asubramanian-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4224	98.8809	99.9700	61.6808	9984	113	9996	3	3	100.0000
jmaeng-gatk	SNP	tv	HG002compoundhet	homalt	99.4223	99.0555	99.7918	42.9493	3356	32	3355	7	6	85.7143
cchapple-custom	INDEL	D1_5	*	*	99.4223	99.1584	99.6877	55.8052	145510	1235	145535	456	300	65.7895
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4223	99.8206	99.0272	61.0885	8345	15	8347	82	80	97.5610
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4223	99.8206	99.0272	61.0885	8345	15	8347	82	80	97.5610
ltrigg-rtg2	SNP	ti	HG002compoundhet	homalt	99.4222	98.9316	99.9177	28.6749	7315	79	7282	6	5	83.3333
jli-custom	SNP	tv	map_l100_m2_e0	*	99.4221	99.3089	99.5355	64.2177	24860	173	24859	116	30	25.8621
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4220	98.8506	100.0000	71.4777	86	1	83	0	0
ltrigg-rtg2	INDEL	D1_5	func_cds	het	99.4220	100.0000	98.8506	36.0294	85	0	86	1	0	0.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4220	98.8506	100.0000	80.7606	86	1	86	0	0
ckim-vqsr	INDEL	D1_5	func_cds	het	99.4220	100.0000	98.8506	62.8205	85	0	86	1	0	0.0000
hfeng-pmm1	INDEL	D1_5	func_cds	het	99.4220	100.0000	98.8506	43.8710	85	0	86	1	0	0.0000
cchapple-custom	INDEL	D1_5	func_cds	het	99.4220	100.0000	98.8506	40.4110	85	0	86	1	0	0.0000
ckim-gatk	INDEL	D1_5	func_cds	het	99.4220	100.0000	98.8506	62.8205	85	0	86	1	0	0.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m1_e0	homalt	99.4220	99.6139	99.2308	80.6620	516	2	516	4	2	50.0000
ghariani-varprowl	SNP	ti	map_l100_m2_e0	homalt	99.4217	99.0660	99.7800	63.1898	18138	171	18138	40	28	70.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4214	99.0232	99.8227	73.4004	5069	50	5067	9	3	33.3333
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4211	99.0527	99.7923	61.9326	4810	46	4804	10	2	20.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.4204	99.1329	99.7095	36.8209	1715	15	1716	5	4	80.0000
hfeng-pmm2	SNP	ti	map_l125_m2_e0	*	99.4203	99.4745	99.3661	73.2412	30099	159	30095	192	23	11.9792
hfeng-pmm2	SNP	tv	map_l250_m2_e1	homalt	99.4201	99.6829	99.1588	88.2127	943	3	943	8	4	50.0000
hfeng-pmm1	SNP	tv	map_l250_m2_e1	homalt	99.4201	99.6829	99.1588	88.1481	943	3	943	8	4	50.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4201	99.1588	99.6829	84.8446	943	8	943	3	1	33.3333
ckim-dragen	INDEL	D1_5	*	*	99.4199	99.4105	99.4294	60.9956	145880	865	145840	837	396	47.3118
jli-custom	SNP	tv	map_l100_m1_e0	*	99.4197	99.2980	99.5417	62.1631	24329	172	24328	112	30	26.7857
bgallagher-sentieon	INDEL	D1_5	map_l100_m0_e0	homalt	99.4197	99.6124	99.2278	83.8529	257	1	257	2	2	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.4197	99.4416	99.3979	75.9193	9082	51	9080	55	15	27.2727
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.4197	99.4416	99.3979	75.9193	9082	51	9080	55	15	27.2727
hfeng-pmm2	INDEL	D1_5	map_l100_m0_e0	homalt	99.4197	99.6124	99.2278	81.9638	257	1	257	2	2	100.0000
ndellapenna-hhga	SNP	*	segdup	het	99.4196	99.4052	99.4339	89.3885	17214	103	17214	98	4	4.0816
ckim-gatk	SNP	tv	func_cds	het	99.4192	99.8871	98.9556	44.4352	2654	3	2653	28	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4191	98.9769	99.8654	39.1534	6675	69	6675	9	3	33.3333
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4189	98.9485	99.8938	85.6381	941	10	941	1	1	100.0000
ltrigg-rtg1	INDEL	C6_15	HG002complexvar	het	99.4186	100.0000	98.8439	78.6420	4	0	171	2	0	0.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4186	99.4186	99.4186	80.4989	171	1	171	1	1	100.0000

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