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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 191 192 193 194 195 196 197 198 199 ... 1720 1721 » 9701-9750 / 86044 show all
dgrover-gatk	SNP	tv	map_l100_m2_e0	*	99.4410	99.4927	99.3893	69.7626	24906	127	24902	153	29	18.9542
jli-custom	INDEL	*	HG002complexvar	het	99.4410	99.0457	99.8394	56.1111	45771	441	45384	73	32	43.8356
astatham-gatk	SNP	tv	map_l125_m2_e0	homalt	99.4410	99.0361	99.8492	66.8223	5959	58	5959	9	6	66.6667
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4409	98.9502	99.9364	58.3709	55047	584	55037	35	12	34.2857
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4408	99.3541	99.5277	74.9889	1692	11	1686	8	2	25.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4405	99.7754	99.1078	52.4231	1333	3	1333	12	0	0.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
ltrigg-rtg1	SNP	tv	map_siren	*	99.4402	99.2053	99.6762	52.0914	45565	365	45564	148	13	8.7838
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4398	100.0000	98.8858	68.4996	1065	0	1065	12	12	100.0000
gduggal-bwaplat	SNP	tv	func_cds	homalt	99.4394	98.8850	100.0000	27.0563	1685	19	1685	0	0
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4393	99.6564	99.2231	66.7595	31036	107	31036	243	19	7.8189
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.4393	99.6564	99.2231	66.7595	31036	107	31036	243	19	7.8189
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4393	99.6255	99.2537	64.1232	266	1	266	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4393	99.6255	99.2537	63.8327	266	1	266	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4393	99.6255	99.2537	63.5870	266	1	266	2	2	100.0000
rpoplin-dv42	SNP	tv	map_siren	het	99.4388	99.4093	99.4683	57.2644	28440	169	28436	152	65	42.7632
egarrison-hhga	INDEL	*	func_cds	*	99.4388	99.5506	99.3274	89.6520	443	2	443	3	0	0.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.4386	99.3404	99.5370	69.4360	1506	10	1505	7	2	28.5714
hfeng-pmm2	INDEL	*	func_cds	*	99.4386	99.3258	99.5516	44.3196	442	3	444	2	0	0.0000
hfeng-pmm1	INDEL	*	func_cds	*	99.4386	99.3258	99.5516	42.1530	442	3	444	2	0	0.0000
rpoplin-dv42	SNP	tv	map_l125_m2_e1	homalt	99.4382	99.0780	99.8010	69.8334	6018	56	6018	12	12	100.0000
hfeng-pmm1	INDEL	I1_5	map_l100_m2_e0	homalt	99.4382	100.0000	98.8827	81.1975	531	0	531	6	4	66.6667
jpowers-varprowl	SNP	ti	map_l100_m2_e0	homalt	99.4381	99.0770	99.8019	64.9829	18140	169	18140	36	28	77.7778
qzeng-custom	SNP	tv	*	*	99.4379	99.2180	99.6588	26.4392	962115	7583	958619	3282	549	16.7276
gduggal-snapvard	SNP	*	*	homalt	99.4378	98.9468	99.9337	17.0443	1167733	12429	1158113	768	475	61.8490
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4376	99.3474	99.5280	38.8679	2740	18	2741	13	13	100.0000
jli-custom	INDEL	*	func_cds	*	99.4376	99.3258	99.5495	41.4248	442	3	442	2	1	50.0000
raldana-dualsentieon	SNP	ti	map_l250_m1_e0	homalt	99.4375	99.0044	99.8745	84.1493	1591	16	1591	2	1	50.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.1762	265	1	265	2	1	50.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.1405	265	1	265	2	1	50.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.2473	265	1	265	2	1	50.0000
dgrover-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.4371	99.8117	99.0654	82.2730	530	1	530	5	4	80.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4371	99.5305	99.3440	66.8736	1060	5	1060	7	7	100.0000
ckim-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.4371	99.8117	99.0654	82.4417	530	1	530	5	4	80.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4371	99.6241	99.2509	82.8296	265	1	265	2	1	50.0000
ltrigg-rtg1	INDEL	C1_5	*	hetalt	99.4371	100.0000	98.8806	95.8674	1	0	265	3	3	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.4368	99.3178	99.5561	50.0867	10336	71	10317	46	37	80.4348
egarrison-hhga	INDEL	I1_5	*	het	99.4365	99.3775	99.4956	58.7039	78549	492	78511	398	185	46.4824
astatham-gatk	INDEL	*	map_siren	homalt	99.4364	99.5480	99.3251	81.5279	2643	12	2649	18	12	66.6667
ltrigg-rtg2	SNP	tv	HG002compoundhet	homalt	99.4361	98.9079	99.9699	40.5831	3351	37	3321	1	1	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4357	99.8255	99.0490	49.7611	4004	7	4062	39	0	0.0000
hfeng-pmm1	INDEL	*	map_siren	homalt	99.4357	99.4727	99.3987	79.2482	2641	14	2645	16	9	56.2500
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4357	99.2481	99.6241	82.5115	264	2	265	1	1	100.0000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4357	98.9449	99.9314	53.1567	27664	295	27664	19	7	36.8421
eyeh-varpipe	SNP	ti	map_siren	*	99.4355	99.7967	99.0768	57.9702	100151	204	97874	912	55	6.0307
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
ckim-gatk	SNP	ti	HG002compoundhet	het	99.4351	99.0847	99.7881	40.5181	9418	87	9418	20	15	75.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4350	98.8764	100.0000	76.2803	88	1	88	0	0

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