PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9651-9700 / 86044 show all
ckim-gatkINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
ckim-vqsrINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
dgrover-gatkINDELI1_5map_l100_m2_e1homalt
99.4465
99.8148
99.0809
82.3434
539153954
80.0000
ckim-gatkINDELI1_5map_l100_m2_e1homalt
99.4465
99.8148
99.0809
82.4799
539153954
80.0000
astatham-gatkSNPtvmap_l125_m2_e1homalt
99.4462
99.0451
99.8506
66.8391
601658601696
66.6667
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4462
99.3676
99.5249
88.0409
12578125766
100.0000
hfeng-pmm2INDELI1_5func_cds*
99.4460
99.4444
99.4475
34.6570
179118010
0.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4459
98.9979
99.8981
48.0313
1175611911761126
50.0000
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4459
99.5389
99.3531
60.6036
1748781175081149
7.8947
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4458
99.2885
99.6035
87.7940
12569125655
100.0000
ckim-dragenSNPtimap_l150_m2_e1homalt
99.4457
99.1031
99.7907
67.9320
76246976291615
93.7500
bgallagher-sentieonINDEL**homalt
99.4457
99.8937
99.0017
58.7526
12503913312504912611237
98.0967
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4457
99.4809
99.4105
79.4316
4216224216257
28.0000
ckim-dragenSNPtimap_l150_m1_e0homalt
99.4455
99.1129
99.7803
65.1947
72626572671615
93.7500
bgallagher-sentieonSNP*map_sirenhet
99.4455
99.6483
99.2436
58.2943
906713209065769177
11.1433
mlin-fermikitSNP*func_cds*
99.4453
99.2617
99.6295
19.0809
18016134180166748
71.6418
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4452
99.5833
99.3075
87.8041
717371754
80.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4452
99.5833
99.3075
87.8041
717371754
80.0000
rpoplin-dv42SNPtimap_l100_m0_e0homalt
99.4451
99.1253
99.7670
62.0330
77066877061817
94.4444
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4451
98.8964
100.0000
34.3864
394344394600
cchapple-customSNPtisegduphet
99.4449
99.8088
99.0837
92.7182
1200723120031115
4.5045
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4448
99.3729
99.5169
82.8933
4120264120208
40.0000
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4445
99.7009
99.1894
39.5064
73332273426010
16.6667
gduggal-bwafbSNPtimap_l100_m0_e0homalt
99.4445
99.0224
99.8703
64.5919
7698767698106
60.0000
dgrover-gatkSNPtvmap_l100_m2_e1*
99.4445
99.4977
99.3914
69.7839
251561272515215429
18.8312
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4442
99.2523
99.6368
83.0397
4115314115157
46.6667
hfeng-pmm3SNPtimap_l125_m1_e0het
99.4436
99.3211
99.5663
71.0299
1814212418138798
10.1266
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4435
99.1224
99.7666
66.9356
28012248282076617
25.7576
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.4433
100.0000
98.8927
33.8067
142701429169
56.2500
ltrigg-rtg1SNP*map_l250_m0_e0homalt
99.4431
99.3641
99.5223
91.8579
625462533
100.0000
ltrigg-rtg2SNP*map_l250_m0_e0homalt
99.4431
99.3641
99.5223
90.1798
625462533
100.0000
cchapple-customINDELI1_5func_cds*
99.4429
99.4444
99.4413
30.0781
179117810
0.0000
rpoplin-dv42INDELD1_5**
99.4429
99.3110
99.5751
58.2332
1457341011145779622549
88.2637
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4429
99.1667
99.7207
68.4651
142812142841
25.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4427
99.6296
99.2565
60.1481
269126722
100.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4427
99.6296
99.2565
62.6389
269126720
0.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4422
99.5809
99.3038
58.0347
4277184279305
16.6667
ckim-vqsrINDEL*func_cds*
99.4421
99.7753
99.1111
54.2683
444144641
25.0000
egarrison-hhgaSNP*map_l125_m1_e0*
99.4419
99.0690
99.8177
68.7095
44905422449058241
50.0000
ckim-dragenSNPtimap_l125_m0_e0homalt
99.4419
99.1761
99.7092
62.9046
44543744571312
92.3077
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.4418
98.9742
99.9138
61.4203
694772695363
50.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.4416
99.2346
99.6494
43.8167
36302854011913
68.4211
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4413
100.0000
98.8889
66.0804
267026733
100.0000
dgrover-gatkSNPtvmap_l150_m2_e1homalt
99.4413
99.0324
99.8537
71.5870
409440409464
66.6667
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4413
98.8889
100.0000
55.5369
267326500
jpowers-varprowlSNPtimap_l100_m1_e0homalt
99.4411
99.0590
99.8261
62.5525
17791169177913126
83.8710
jpowers-varprowlSNPtimap_l100_m2_e1homalt
99.4410
99.0808
99.8039
64.9625
18324170183243628
77.7778