PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 189 190 191 192 193 194 195 196 197 ... 1720 1721 » 9601-9650 / 86044 show all
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4518	99.2341	99.6703	69.5244	907	7	907	3	0	0.0000
dgrover-gatk	SNP	tv	map_l100_m0_e0	homalt	99.4517	99.0380	99.8689	62.1627	3809	37	3809	5	3	60.0000
ckim-gatk	SNP	tv	HG002compoundhet	homalt	99.4517	99.0555	99.8512	42.9154	3356	32	3355	5	4	80.0000
hfeng-pmm1	SNP	ti	map_l125_m1_e0	*	99.4515	99.2091	99.6951	68.8149	29103	232	29099	89	25	28.0899
jmaeng-gatk	SNP	*	func_cds	*	99.4513	99.8678	99.0382	31.9360	18126	24	18123	176	1	0.5682
hfeng-pmm3	SNP	ti	map_l125_m2_e0	het	99.4510	99.3325	99.5698	72.2770	18750	126	18746	81	8	9.8765
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4508	99.0372	99.8678	44.3327	2263	22	2266	3	0	0.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4506	99.7507	99.1523	64.1117	27609	69	27604	236	18	7.6271
cchapple-custom	SNP	tv	HG002compoundhet	homalt	99.4506	98.9374	99.9692	37.6656	3352	36	3246	1	1	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4505	99.3666	99.5347	87.4509	2353	15	2353	11	10	90.9091
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
ckim-vqsr	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	47.8632	180	0	181	2	0	0.0000
dgrover-gatk	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	35.1064	180	0	181	2	0	0.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.0108	362	2	362	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	34.6429	180	0	181	2	0	0.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.1280	362	2	362	2	2	100.0000
astatham-gatk	INDEL	I1_5	func_cds	*	99.4505	100.0000	98.9071	34.4086	180	0	181	2	0	0.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4504	99.3304	99.5707	59.9377	19729	133	19713	85	64	75.2941
ckim-dragen	INDEL	*	*	het	99.4503	99.5962	99.3048	61.2221	193349	784	192841	1350	335	24.8148
raldana-dualsentieon	SNP	*	map_l250_m1_e0	homalt	99.4502	99.1474	99.7549	84.1101	2442	21	2442	6	3	50.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	*	99.4499	99.1625	99.7391	58.6120	32441	274	32494	85	69	81.1765
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4498	99.4505	99.4490	84.0999	362	2	361	2	2	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4496	99.8356	99.0666	73.6565	21863	36	21863	206	205	99.5146
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4495	99.2663	99.6334	73.6527	1353	10	1359	5	3	60.0000
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4494	99.3637	99.5353	61.3550	55277	354	55266	258	27	10.4651
egarrison-hhga	SNP	*	map_l125_m2_e1	*	99.4493	99.0890	99.8122	70.5609	46772	430	46772	88	41	46.5909
gduggal-snapvard	SNP	ti	*	homalt	99.4493	98.9663	99.9370	16.0694	794738	8301	790421	498	326	65.4618
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4490	99.1758	99.7238	84.2814	361	3	361	1	1	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e0	*	99.4490	99.0882	99.8124	70.5171	46297	426	46297	87	41	47.1264
gduggal-snapplat	SNP	*	segdup	homalt	99.4486	99.0692	99.8310	88.7280	10643	100	10636	18	13	72.2222
jmaeng-gatk	INDEL	D1_5	HG002complexvar	*	99.4486	99.1930	99.7055	58.6476	32451	264	32505	96	76	79.1667
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4485	99.9742	98.9283	61.3587	3877	1	3877	42	1	2.3810
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4485	99.0842	99.8155	76.9264	541	5	541	1	1	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4480	99.1333	99.7647	74.0763	2974	26	2968	7	3	42.8571
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4479	99.1196	99.7784	77.4446	1351	12	1351	3	2	66.6667
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4476	99.1594	99.7375	38.8443	3421	29	3420	9	2	22.2222
ckim-dragen	SNP	*	map_l125_m0_e0	homalt	99.4476	99.2253	99.6709	64.2590	6660	52	6663	22	19	86.3636
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	100.0000	98.9011	66.2963	92	0	90	1	1	100.0000
hfeng-pmm3	SNP	*	map_l150_m1_e0	*	99.4475	99.3825	99.5125	74.0748	30420	189	30414	149	23	15.4362
hfeng-pmm1	INDEL	I1_5	map_l100_m2_e1	homalt	99.4475	100.0000	98.9011	81.3078	540	0	540	6	4	66.6667
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	98.9011	100.0000	72.3149	540	6	531	0	0
ndellapenna-hhga	INDEL	I1_5	func_cds	*	99.4475	100.0000	98.9011	31.8352	180	0	180	2	0	0.0000
egarrison-hhga	INDEL	I1_5	func_cds	*	99.4475	100.0000	98.9011	32.0896	180	0	180	2	0	0.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4474	99.8648	99.0334	44.0841	10343	14	10348	101	98	97.0297
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4474	98.9552	99.9444	60.4265	10797	114	10794	6	4	66.6667
hfeng-pmm1	INDEL	D6_15	*	homalt	99.4474	99.5732	99.3220	50.6075	6299	27	6299	43	42	97.6744
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4473	99.1113	99.7856	56.2027	16283	146	16290	35	23	65.7143
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.4469	98.9759	99.9224	33.5509	3866	40	3865	3	2	66.6667
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.4469	99.5112	99.3827	62.5253	3868	19	3864	24	9	37.5000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4468	99.0921	99.8040	75.9768	1528	14	1528	3	1	33.3333

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge