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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 188 189 190 191 192 193 194 195 196 ... 1720 1721 » 9551-9600 / 86044 show all
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4582	99.2565	99.6607	48.9520	2937	22	2937	10	1	10.0000
jmaeng-gatk	SNP	ti	segdup	homalt	99.4577	98.9740	99.9462	87.6674	7428	77	7428	4	4	100.0000
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4577	99.1576	99.7596	63.2532	17420	148	17430	42	21	50.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4574	99.5649	99.3502	34.3868	2746	12	2599	17	7	41.1765
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4573	99.8975	99.0210	40.1856	10721	11	10721	106	1	0.9434
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4573	99.6653	99.2501	46.8795	8338	28	8338	63	60	95.2381
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4572	99.2298	99.6856	78.8294	6055	47	6025	19	12	63.1579
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4571	99.1580	99.7580	57.7755	2473	21	2473	6	0	0.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4571	99.1342	99.7821	56.9822	458	4	458	1	1	100.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4570	99.7110	99.2042	74.6128	345	1	374	3	1	33.3333
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.4570	99.1333	99.7828	28.5493	915	8	919	2	2	100.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
ltrigg-rtg2	SNP	*	map_siren	*	99.4570	99.1479	99.7681	47.8411	144981	1246	144975	337	38	11.2760
qzeng-custom	SNP	ti	*	het	99.4567	99.1981	99.7166	23.5601	1271618	10279	1269681	3608	520	14.4124
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4565	99.1870	99.7275	80.7349	366	3	366	1	1	100.0000
mlin-fermikit	SNP	ti	func_cds	het	99.4565	98.9887	99.9288	17.2332	8418	86	8418	6	0	0.0000
hfeng-pmm1	INDEL	D1_5	segdup	*	99.4565	99.4560	99.4570	94.0511	1097	6	1099	6	0	0.0000
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4564	98.9898	99.9274	58.6346	55069	562	55060	40	15	37.5000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4564	99.7391	99.1754	42.0292	10704	28	10704	89	2	2.2472
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4563	98.9185	100.0000	62.5546	1372	15	1372	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4563	98.9185	100.0000	61.9839	1372	15	1372	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4561	99.0468	99.8688	31.9345	4572	44	4568	6	0	0.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4556	99.3958	99.5154	60.4361	1645	10	1643	8	5	62.5000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4555	99.2754	99.6364	86.7438	1096	8	1096	4	3	75.0000
ndellapenna-hhga	SNP	ti	segdup	het	99.4554	99.4264	99.4843	88.9326	11961	69	11961	62	2	3.2258
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4553	99.7222	99.1897	69.2866	1436	4	1469	12	1	8.3333
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4553	99.3353	99.5755	60.7194	1644	11	1642	7	4	57.1429
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4553	99.8906	99.0239	69.8002	913	1	913	9	0	0.0000
jmaeng-gatk	SNP	*	HG002compoundhet	homalt	99.4551	99.0262	99.8877	35.0471	10677	105	10676	12	11	91.6667
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4550	98.9160	100.0000	75.9184	365	4	354	0	0
cchapple-custom	INDEL	D1_5	segdup	*	99.4547	99.1840	99.7268	94.3229	1094	9	1095	3	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4544	99.0741	99.8377	37.0787	7383	69	7380	12	3	25.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4541	99.1074	99.8032	43.2339	11769	106	11664	23	18	78.2609
ltrigg-rtg2	INDEL	D1_5	segdup	*	99.4540	99.1840	99.7255	92.9516	1094	9	1090	3	0	0.0000
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4538	99.1867	99.7223	73.1991	63907	524	63923	178	156	87.6404
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4536	99.5624	99.3450	70.1434	910	4	910	6	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4536	99.7807	99.1285	70.2141	910	2	910	8	5	62.5000
ghariani-varprowl	SNP	ti	HG002complexvar	het	99.4535	99.6801	99.2280	19.8744	313754	1007	313878	2442	84	3.4398
ckim-dragen	SNP	ti	map_l150_m2_e0	homalt	99.4533	99.1203	99.7886	67.8815	7549	67	7554	16	15	93.7500
hfeng-pmm3	SNP	*	map_l250_m1_e0	homalt	99.4527	99.5940	99.3117	86.9423	2453	10	2453	17	6	35.2941
hfeng-pmm1	SNP	*	map_l250_m1_e0	homalt	99.4527	99.5940	99.3117	86.9979	2453	10	2453	17	6	35.2941
jli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4524	99.5614	99.3435	66.3352	908	4	908	6	4	66.6667
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4522	99.1505	99.7558	69.0710	817	7	817	2	1	50.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4520	98.9651	99.9438	27.8836	7172	75	7111	4	4	100.0000
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4519	98.9956	99.9125	62.9106	27400	278	27391	24	10	41.6667
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.8428	99.0640	53.5675	2540	4	2540	24	0	0.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e1	het	99.4518	99.3346	99.5693	72.3168	18960	127	18956	82	8	9.7561
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.3532	99.5506	74.6799	768	5	886	4	2	50.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4518	99.2381	99.6663	75.2850	5080	39	5078	17	10	58.8235

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