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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9351-9400 / 86044 show all
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4816
99.3427
99.6209
60.8825
10587105142
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4814
99.4694
99.4934
82.7155
4124224124217
33.3333
jpowers-varprowlSNP*segduphomalt
99.4812
99.9441
99.0225
89.9716
1073761073810665
61.3208
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.4812
99.0741
99.8917
37.3686
738369738082
25.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4812
99.4812
99.4812
78.2296
15348153485
62.5000
ckim-gatkSNP*segduphomalt
99.4811
99.0505
99.9155
88.5459
106411021064199
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4810
99.1533
99.8108
81.4724
10549105521
50.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4808
99.3427
99.6193
80.0419
1073071107304117
41.4634
jli-customINDEL*segduphomalt
99.4802
99.6875
99.2739
93.3014
957395776
85.7143
hfeng-pmm2SNPtvmap_l100_m1_e0*
99.4801
99.5919
99.3687
67.2876
244011002439715517
10.9677
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4801
99.6983
99.2628
67.4240
17515531750513011
8.4615
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4796
99.6391
99.3205
59.4883
248592485170
0.0000
hfeng-pmm3SNP*map_l250_m2_e0homalt
99.4794
99.5905
99.3685
87.8350
2675112675176
35.2941
hfeng-pmm1SNP*map_l250_m2_e0homalt
99.4794
99.5905
99.3685
87.8799
2675112675176
35.2941
ltrigg-rtg2SNPtvmap_l250_m0_e0homalt
99.4792
98.9637
100.0000
91.0664
191219100
ltrigg-rtg1SNPtvmap_l250_m0_e0homalt
99.4792
98.9637
100.0000
92.6482
191219100
egarrison-hhgaINDEL*segduphomalt
99.4792
99.4792
99.4792
93.5414
955595555
100.0000
gduggal-bwafbSNPtifunc_cdshet
99.4792
99.9530
99.0099
30.9221
850048500852
2.3529
jli-customSNPtvmap_sirenhet
99.4790
99.4407
99.5172
56.5108
284491602844713826
18.8406
astatham-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4789
99.8586
99.1021
72.7252
3532535323232
100.0000
ckim-dragenSNPtvmap_l100_m0_e0homalt
99.4789
99.2720
99.6867
59.7308
38182838181210
83.3333
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4788
99.0272
99.9346
76.0876
152715152710
0.0000
ckim-isaacSNPtifunc_cds*
99.4788
98.9918
99.9707
19.0273
136481391364842
50.0000
ltrigg-rtg2SNPtimap_siren*
99.4787
99.1669
99.7924
46.9044
995188369951320730
14.4928
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4785
99.4206
99.5365
64.1313
858585943
75.0000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4785
99.4671
99.4898
52.4587
2240122145112
18.1818
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.4784
99.1386
99.8206
46.1563
6675586677126
50.0000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.4783
99.1237
99.8355
46.7341
6674596676115
45.4545
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4783
99.9198
99.0408
63.4745
249222478242
8.3333
gduggal-bwaplatSNP*func_cds*
99.4779
99.2121
99.7452
34.2475
1800714318007464
8.6957
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4779
99.3048
99.6516
61.8182
857685832
66.6667
ckim-isaacSNP*func_cdshet
99.4778
98.9965
99.9638
21.3254
110491121104940
0.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.4778
99.2346
99.7223
46.3498
3630283591101
10.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4777
99.0751
99.8835
34.2649
171416171522
100.0000
raldana-dualsentieonSNP*map_l250_m2_e0homalt
99.4772
99.1809
99.7753
85.3224
266422266463
50.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4772
99.5662
99.3884
73.4002
918497564
66.6667
ltrigg-rtg2INDELD1_5**
99.4769
99.2395
99.7155
55.7210
1456291116145463415145
34.9398
bgallagher-sentieonSNPtimap_sirenhet
99.4766
99.6377
99.3160
56.6817
621562266214742850
11.6822
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4764
99.2167
99.7375
83.4131
380338011
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4764
99.2167
99.7375
82.5868
380338011
100.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4763
99.0588
99.8974
52.8829
389437389440
0.0000
gduggal-bwafbSNPtvfunc_cds*
99.4763
99.9542
99.0029
37.0021
436924369440
0.0000
jli-customSNP*map_l100_m2_e1*
99.4761
99.3323
99.6202
63.1271
742384997423528379
27.9152
astatham-gatkSNP*map_l125_m2_e1homalt
99.4760
99.0703
99.8850
66.1765
17369163173692016
80.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4759
99.4255
99.5264
47.7277
2942172942140
0.0000
jli-customSNPtvHG002compoundhethet
99.4759
99.5292
99.4226
55.0428
46512246492710
37.0370
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4759
99.0435
99.9122
35.0997
341733341430
0.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4759
99.0435
99.9122
35.7223
341733341430
0.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.4758
99.1531
99.8007
37.5709
1802915418026362
5.5556
hfeng-pmm3SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4756
99.0317
99.9234
63.0172
2741026827401218
38.0952