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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 183 184 185 186 187 188 189 190 191 ... 1720 1721 » 9301-9350 / 86044 show all
astatham-gatk	SNP	ti	map_l125_m2_e0	homalt	99.4872	99.0755	99.9023	65.7910	11253	105	11253	11	10	90.9091
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4872	99.3714	99.6033	48.0102	4268	27	4268	17	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4872	99.1352	99.8416	45.8405	2522	22	2522	4	0	0.0000
hfeng-pmm2	SNP	tv	map_l100_m2_e0	*	99.4872	99.6005	99.3742	68.8945	24933	100	24929	157	17	10.8280
jmaeng-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4869	99.9155	99.0621	74.5055	30735	26	30735	291	281	96.5636
hfeng-pmm1	SNP	tv	map_l125_m2_e0	*	99.4866	99.3147	99.6592	71.0071	16376	113	16374	56	16	28.5714
ckim-vqsr	INDEL	D1_5	map_siren	homalt	99.4864	99.4007	99.5723	81.4444	1161	7	1164	5	4	80.0000
ckim-gatk	INDEL	D1_5	map_siren	homalt	99.4864	99.4007	99.5723	81.4444	1161	7	1164	5	4	80.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4862	100.0000	98.9777	68.5196	1065	0	1065	11	11	100.0000
gduggal-bwafb	SNP	tv	map_l125_m1_e0	homalt	99.4861	99.1126	99.8624	68.8267	5808	52	5808	8	6	75.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4861	99.5813	99.3911	58.2577	8325	35	8325	51	50	98.0392
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4861	99.5813	99.3911	58.2577	8325	35	8325	51	50	98.0392
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4859	99.1534	99.8206	46.3856	6676	57	6678	12	5	41.6667
ltrigg-rtg1	SNP	*	map_siren	*	99.4858	99.2395	99.7333	50.0979	145115	1112	145108	388	49	12.6289
bgallagher-sentieon	SNP	tv	segdup	*	99.4858	99.8125	99.1612	91.3387	8516	16	8512	72	6	8.3333
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4857	99.3958	99.5758	60.5358	1645	10	1643	7	4	57.1429
jli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4857	99.1089	99.8653	46.8501	6673	60	6673	9	5	55.5556
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4856	99.3676	99.6038	88.3504	1257	8	1257	5	5	100.0000
hfeng-pmm3	SNP	*	map_l250_m2_e1	homalt	99.4855	99.5953	99.3759	87.8906	2707	11	2707	17	6	35.2941
hfeng-pmm1	SNP	*	map_l250_m2_e1	homalt	99.4855	99.5953	99.3759	87.9341	2707	11	2707	17	6	35.2941
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4854	99.3353	99.6359	61.3327	1644	11	1642	6	3	50.0000
rpoplin-dv42	SNP	*	*	hetalt	99.4854	99.8852	99.0888	49.8858	870	1	870	8	8	100.0000
rpoplin-dv42	SNP	tv	*	hetalt	99.4854	99.8852	99.0888	49.8858	870	1	870	8	8	100.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4853	99.5058	99.4648	66.6987	4832	24	4832	26	14	53.8462
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4851	99.1786	99.7934	64.5161	483	4	483	1	1	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4851	99.1786	99.7934	64.4901	483	4	483	1	1	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4851	99.1786	99.7934	67.2973	483	4	483	1	1	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4851	99.1786	99.7934	64.4118	483	4	483	1	1	100.0000
hfeng-pmm3	SNP	*	map_l100_m0_e0	*	99.4850	99.4123	99.5578	68.0774	32648	193	32644	145	21	14.4828
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4850	99.2977	99.6730	35.9284	3959	28	3962	13	12	92.3077
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4849	99.1930	99.7786	75.9411	1352	11	1352	3	1	33.3333
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4848	99.7183	99.2523	67.2382	1062	3	1062	8	8	100.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4847	99.7826	99.1887	63.5467	35342	77	35331	289	22	7.6125
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4843	99.6244	99.3446	67.0980	1061	4	1061	7	7	100.0000
ckim-dragen	SNP	*	map_l150_m1_e0	homalt	99.4842	99.2194	99.7504	65.7675	11185	88	11190	28	25	89.2857
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4840	98.9733	100.0000	60.3521	482	5	473	0	0
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.4836	98.9726	100.0000	18.6798	578	6	579	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.4836	98.9726	100.0000	18.6798	578	6	579	0	0
raldana-dualsentieon	SNP	*	map_l250_m2_e1	homalt	99.4834	99.1906	99.7779	85.3835	2696	22	2696	6	3	50.0000
raldana-dualsentieon	SNP	ti	map_l250_m2_e0	homalt	99.4834	99.0852	99.8847	85.3537	1733	16	1733	2	1	50.0000
gduggal-bwafb	SNP	tv	map_l125_m2_e0	homalt	99.4828	99.1025	99.8660	70.9836	5963	54	5963	8	6	75.0000
astatham-gatk	INDEL	*	HG002complexvar	*	99.4827	99.2916	99.6745	58.3541	76393	545	76257	249	212	85.1406
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4824	99.4939	99.4709	56.5517	1376	7	1316	7	1	14.2857
asubramanian-gatk	INDEL	*	HG002complexvar	homalt	99.4823	99.5116	99.4530	57.3903	26895	132	26910	148	101	68.2432
raldana-dualsentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4822	99.9317	99.0367	73.5845	30740	21	30740	299	294	98.3278
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4820	99.5452	99.4189	54.5520	55378	253	55428	324	26	8.0247
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4819	99.6109	99.3532	78.1854	1536	6	1536	10	5	50.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.4819	100.0000	98.9691	42.7729	192	0	192	2	1	50.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.4819	100.0000	98.9691	42.0896	192	0	192	2	1	50.0000
astatham-gatk	SNP	ti	map_l125_m1_e0	homalt	99.4818	99.0675	99.8996	63.1497	10942	103	10942	11	10	90.9091

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