PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 181 182 183 184 185 186 187 188 189 ... 1720 1721 » 9201-9250 / 86044 show all
hfeng-pmm2	SNP	ti	map_l250_m1_e0	homalt	99.5025	99.5644	99.4406	86.8749	1600	7	1600	9	2	22.2222
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5025	99.0393	99.9700	61.7944	10000	97	10000	3	3	100.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e0	*	99.5024	99.4394	99.5655	75.5202	20397	115	20393	89	14	15.7303
mlin-fermikit	SNP	ti	func_cds	*	99.5022	99.3109	99.6942	17.8687	13692	95	13692	42	34	80.9524
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5020	99.5471	99.4570	86.4067	1099	5	1099	6	5	83.3333
egarrison-hhga	SNP	*	map_l250_m2_e1	homalt	99.5018	99.1906	99.8149	87.6004	2696	22	2696	5	5	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5016	99.4565	99.5467	86.5782	1098	6	1098	5	4	80.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5016	99.3035	99.7006	63.3236	998	7	999	3	2	66.6667
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5016	99.4565	99.5467	86.5782	1098	6	1098	5	4	80.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5015	99.5702	99.4329	75.1639	5097	22	5085	29	11	37.9310
jli-custom	SNP	ti	map_l100_m2_e1	*	99.5011	99.3412	99.6614	62.5257	49159	326	49157	167	50	29.9401
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5010	99.4006	99.6016	52.3483	25207	152	26749	107	95	88.7850
hfeng-pmm2	INDEL	D1_5	segdup	*	99.5010	99.3654	99.6370	94.5866	1096	7	1098	4	0	0.0000
egarrison-hhga	SNP	ti	map_l250_m1_e0	homalt	99.5006	99.1910	99.8121	86.3830	1594	13	1594	3	3	100.0000
gduggal-bwafb	SNP	ti	map_l125_m2_e0	homalt	99.5006	99.1196	99.8847	69.9640	11258	100	11258	13	7	53.8462
jpowers-varprowl	SNP	*	*	*	99.5004	99.5447	99.4561	23.3348	3040706	13908	3041157	16632	2670	16.0534
dgrover-gatk	SNP	*	map_l100_m1_e0	*	99.4999	99.4779	99.5218	66.8041	72025	378	72014	346	78	22.5434
rpoplin-dv42	INDEL	D1_5	segdup	*	99.4999	99.1840	99.8179	94.3988	1094	9	1096	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	*	*	99.4998	99.2726	99.7280	57.5644	149568	1096	149613	408	306	75.0000
ndellapenna-hhga	SNP	tv	map_siren	*	99.4997	99.1596	99.8422	55.1910	45544	386	45544	72	30	41.6667
dgrover-gatk	SNP	*	map_l100_m2_e1	*	99.4995	99.4835	99.5154	68.3658	74351	386	74340	362	79	21.8232
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4994	99.8555	99.1459	64.4153	27638	40	27628	238	20	8.4034
gduggal-bwafb	SNP	*	map_l125_m2_e1	homalt	99.4990	99.1216	99.8793	70.3837	17378	154	17378	21	13	61.9048
rpoplin-dv42	SNP	*	map_l125_m1_e0	homalt	99.4988	99.2251	99.7740	66.6415	16774	131	16774	38	37	97.3684
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4987	99.1235	99.8768	54.4784	16285	144	16208	20	7	35.0000
gduggal-bwaplat	SNP	ti	func_cds	*	99.4984	99.2747	99.7231	31.1374	13687	100	13687	38	4	10.5263
egarrison-hhga	SNP	tv	map_l100_m2_e1	*	99.4981	99.1892	99.8090	65.1604	25078	205	25078	48	19	39.5833
hfeng-pmm2	SNP	*	map_l250_m2_e0	homalt	99.4980	99.6277	99.3687	87.8966	2676	10	2676	17	6	35.2941
hfeng-pmm1	INDEL	I1_5	HG002complexvar	het	99.4978	99.1313	99.8669	57.6162	18031	158	18012	24	10	41.6667
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4978	99.5967	99.3992	57.0007	17779	72	17867	108	27	25.0000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4978	99.2429	99.7541	54.5635	25167	192	25148	62	34	54.8387
jli-custom	SNP	ti	map_l100_m2_e0	*	99.4978	99.3362	99.6598	62.5143	48636	325	48634	166	50	30.1205
jli-custom	SNP	ti	map_l100_m1_e0	*	99.4974	99.3240	99.6713	60.4603	47607	324	47605	157	50	31.8471
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4971	99.8738	99.1234	45.0258	4747	6	4749	42	40	95.2381
gduggal-snapplat	SNP	ti	*	homalt	99.4971	99.0644	99.9337	17.3977	795526	7513	795327	528	217	41.0985
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.4970	99.5995	99.3948	81.7770	1492	6	1478	9	8	88.8889
ckim-dragen	SNP	ti	map_l100_m0_e0	homalt	99.4968	99.1896	99.8059	56.2121	7711	63	7714	15	14	93.3333
qzeng-custom	SNP	*	*	*	99.4966	99.2413	99.7533	22.5407	3031458	23176	3012983	7452	1530	20.5314
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4966	99.3171	99.6769	61.8156	28067	193	28070	91	68	74.7253
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.4965	99.7175	99.2765	38.0786	2471	7	2470	18	1	5.5556
gduggal-bwavard	SNP	tv	*	homalt	99.4965	99.0327	99.9647	19.0358	373475	3648	371220	131	86	65.6489
dgrover-gatk	SNP	*	map_l100_m2_e0	*	99.4963	99.4795	99.5130	68.3628	73579	385	73568	360	79	21.9444
egarrison-hhga	SNP	tv	map_l100_m1_e0	*	99.4963	99.1715	99.8233	63.2033	24298	203	24298	43	19	44.1860
egarrison-hhga	SNP	*	map_l250_m2_e0	homalt	99.4958	99.1809	99.8127	87.5461	2664	22	2664	5	5	100.0000
gduggal-bwafb	SNP	ti	map_l125_m1_e0	homalt	99.4956	99.1127	99.8814	67.6839	10947	98	10947	13	7	53.8462
bgallagher-sentieon	INDEL	*	HG002complexvar	*	99.4954	99.3774	99.6137	58.2041	76459	479	76328	296	257	86.8243
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4954	99.2083	99.7842	37.6168	7393	59	7397	16	10	62.5000
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4951	99.4232	99.5671	63.4301	1379	8	1380	6	2	33.3333
egarrison-hhga	SNP	tv	map_l100_m2_e0	*	99.4951	99.1851	99.8071	65.1309	24829	204	24829	48	19	39.5833
bgallagher-sentieon	INDEL	D1_5	segdup	het	99.4950	99.5665	99.4236	94.8997	689	3	690	4	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge