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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9151-9200 / 86044 show all
ltrigg-rtg1INDELI1_5HG002complexvarhomalt
99.5102
99.1299
99.8933
45.8849
1333011713110149
64.2857
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5101
99.0249
100.0000
30.0763
914991600
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5100
99.3604
99.6600
70.5987
264117263892
22.2222
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5100
99.6190
99.4012
66.6667
523249830
0.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5098
99.3105
99.7100
37.0828
106587410658312
6.4516
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.5097
99.6726
99.3473
37.7178
213172131142
14.2857
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5095
99.8906
99.1314
69.3307
913191380
0.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5094
99.3762
99.6429
67.2531
66914266962419
79.1667
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5094
99.6893
99.3302
65.3964
27592862758218618
9.6774
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5093
99.4855
99.5331
74.9202
2127112345119
81.8182
astatham-gatkINDELD1_5map_l100_m2_e0homalt
99.5090
99.5090
99.5090
83.7888
608360832
66.6667
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.5088
99.0743
99.9471
55.8025
170181591701596
66.6667
ltrigg-rtg1INDELD1_5map_l100_m2_e0homalt
99.5087
99.3453
99.6727
80.7741
607460922
100.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5086
99.8706
99.1491
56.7671
617686176532
3.7736
jlack-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.5082
99.1830
99.8355
58.4841
121410121422
100.0000
ghariani-varprowlSNPtifunc_cdshet
99.5080
99.8942
99.1249
31.7349
849598495752
2.6667
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5073
99.5362
99.4784
36.9220
3434163433185
27.7778
raldana-dualsentieonINDELI1_5*het
99.5073
99.2827
99.7331
57.9285
7847456778457210142
67.6190
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5072
99.1591
99.8579
31.1980
141512140522
100.0000
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.7419
3533435333131
100.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.8167
3533435333131
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5070
99.8586
99.1578
72.7530
3532535323030
100.0000
ckim-vqsrSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5068
99.4678
99.5459
59.1769
177569517755816
7.4074
rpoplin-dv42SNP*map_l125_m2_e0homalt
99.5066
99.2403
99.7743
69.1861
17243132172433938
97.4359
ltrigg-rtg1SNPtimap_siren*
99.5060
99.2556
99.7576
49.1435
996077479960124238
15.7025
ckim-gatkINDELI1_5map_sirenhomalt
99.5056
99.5050
99.5062
78.6204
12066120964
66.6667
hfeng-pmm1INDELD1_5**
99.5052
99.1482
99.8648
57.2252
1454951250145547197112
56.8528
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.5051
99.6037
99.4067
88.7962
15086150899
100.0000
jmaeng-gatkINDELI1_5map_sirenhomalt
99.5051
99.4224
99.5878
78.4891
12057120854
80.0000
gduggal-bwafbSNPtimap_l125_m2_e1homalt
99.5050
99.1272
99.8857
70.0171
1135810011358137
53.8462
hfeng-pmm2SNPtvmap_l125_m0_e0homalt
99.5050
99.5498
99.4602
72.5691
2211102211124
33.3333
hfeng-pmm1SNPtvmap_l125_m0_e0homalt
99.5050
99.5498
99.4602
72.4501
2211102211124
33.3333
rpoplin-dv42INDELI1_5map_sirenhomalt
99.5047
99.4224
99.5871
77.9738
12057120653
60.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5047
99.5794
99.4300
77.4061
6629286629387
18.4211
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.5047
99.0504
99.9631
30.7908
271226271211
100.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5046
99.0824
99.9304
64.6956
114461061149186
75.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5046
99.0824
99.9304
64.6956
114461061149186
75.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.5045
99.0138
100.0000
86.4030
502550200
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5044
99.0738
99.9389
63.8841
114451071144577
100.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5044
99.0738
99.9389
63.8841
114451071144577
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5044
99.4538
99.5551
80.0137
1074259107424817
35.4167
ckim-gatkSNPtvsegduphomalt
99.5043
99.1970
99.8135
89.9144
321226321266
100.0000
hfeng-pmm2SNP*map_l250_m2_e1homalt
99.5040
99.6321
99.3761
87.9531
2708102708176
35.2941
bgallagher-sentieonSNPtvmap_l125_m0_e0homalt
99.5036
99.2796
99.7286
68.6827
220516220564
66.6667
jmaeng-gatkSNPtvHG002complexvar*
99.5035
99.0473
99.9639
22.5835
24380723452437158831
35.2273
hfeng-pmm3SNPtvmap_l125_m1_e0*
99.5034
99.4568
99.5500
69.7161
1592987159277210
13.8889
bgallagher-sentieonSNP*segdup*
99.5028
99.8432
99.1647
90.1877
28023442801723612
5.0848
ghariani-varprowlSNP*map_sirenhomalt
99.5027
99.3944
99.6112
54.3239
5482233454823214127
59.3458
hfeng-pmm3SNPtimap_l150_m2_e1*
99.5026
99.4402
99.5651
75.5918
20607116206039014
15.5556
hfeng-pmm3SNPtimap_l250_m1_e0homalt
99.5025
99.5644
99.4406
86.8266
16007160092
22.2222