PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 179 180 181 182 183 184 185 186 187 ... 1720 1721 » 9101-9150 / 86044 show all
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5149	99.3263	99.7043	51.4820	11795	80	11800	35	21	60.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.5149	99.7222	99.3084	87.5709	718	2	718	5	4	80.0000
hfeng-pmm1	INDEL	I1_5	*	*	99.5147	99.2699	99.7606	57.3300	149564	1100	149609	359	252	70.1950
hfeng-pmm1	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	38.6228	205	2	205	0	0
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5146	99.0842	99.9487	54.1691	3895	36	3895	2	0	0.0000
hfeng-pmm3	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	37.3089	205	2	205	0	0
hfeng-pmm2	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	39.5280	205	2	205	0	0
bgallagher-sentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
astatham-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
dgrover-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.9375	205	2	205	0	0
jli-custom	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	36.3354	205	2	205	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5146	99.6528	99.3767	68.2498	1435	5	1435	9	0	0.0000
raldana-dualsentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	34.5048	205	2	205	0	0
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5144	99.6757	99.3536	78.0162	1537	5	1537	10	5	50.0000
hfeng-pmm1	SNP	ti	map_l250_m2_e0	homalt	99.5141	99.5426	99.4857	87.7793	1741	8	1741	9	2	22.2222
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.2386	819	5	819	3	1	33.3333
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.6258	819	5	819	3	1	33.3333
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5138	99.8915	99.1389	78.0222	921	1	921	8	3	37.5000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.5138	99.1122	99.9186	36.8380	2456	22	2455	2	1	50.0000
raldana-dualsentieon	SNP	*	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
hfeng-pmm3	INDEL	D1_5	*	*	99.5137	99.1441	99.8861	56.7122	145489	1256	145542	166	109	65.6627
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5135	99.4812	99.5457	78.2406	1534	8	1534	7	5	71.4286
ltrigg-rtg2	SNP	*	func_cds	het	99.5132	99.8298	99.1986	22.7101	11142	19	11141	90	1	1.1111
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5131	99.4163	99.6101	78.2596	1533	9	1533	6	5	83.3333
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5131	99.3427	99.6841	80.0486	10730	71	10730	34	12	35.2941
gduggal-bwavard	SNP	*	*	homalt	99.5128	99.0597	99.9700	16.7717	1169065	11097	1159771	348	269	77.2989
astatham-gatk	INDEL	*	*	het	99.5127	99.4973	99.5281	60.7701	193157	976	192779	914	573	62.6915
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5126	99.8992	99.1290	74.4665	30730	31	30730	270	263	97.4074
egarrison-hhga	SNP	ti	map_l250_m2_e0	homalt	99.5125	99.1995	99.8274	87.5412	1735	14	1735	3	3	100.0000
ckim-vqsr	INDEL	D1_5	*	*	99.5124	99.3485	99.6767	61.5493	145789	956	145843	473	318	67.2304
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5123	99.0294	100.0000	77.4811	3877	38	3896	0	0
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.5123	99.4950	99.5296	71.9110	28567	145	28561	135	47	34.8148
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.5123	99.4950	99.5296	71.9110	28567	145	28561	135	47	34.8148
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5122	99.2515	99.7743	48.6278	1326	10	1326	3	0	0.0000
jli-custom	INDEL	*	*	het	99.5119	99.3015	99.7232	58.0133	192777	1356	192389	534	340	63.6704
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5118	99.8232	99.2024	37.2444	7342	13	7338	59	5	8.4746
hfeng-pmm1	SNP	tv	map_l150_m0_e0	homalt	99.5118	99.7741	99.2509	78.2644	1325	3	1325	10	3	30.0000
hfeng-pmm2	SNP	tv	map_l150_m0_e0	homalt	99.5118	99.7741	99.2509	78.3981	1325	3	1325	10	3	30.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5118	99.1766	99.8493	51.4275	1325	11	1325	2	0	0.0000
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5116	99.0847	99.9423	61.0562	1732	16	1732	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.5113	99.0527	99.9742	29.4879	3869	37	3868	1	1	100.0000
cchapple-custom	INDEL	D1_5	*	het	99.5112	99.3229	99.7003	54.7900	86981	593	97146	292	149	51.0274
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5111	99.0269	100.0000	52.7669	1323	13	1323	0	0
rpoplin-dv42	SNP	*	map_l125_m2_e1	homalt	99.5110	99.2471	99.7764	69.2363	17400	132	17400	39	38	97.4359
ltrigg-rtg2	INDEL	I1_5	*	het	99.5106	99.4497	99.5716	56.0879	78606	435	77868	335	92	27.4627
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5105	99.3794	99.6419	52.1832	1121	7	1113	4	2	50.0000
dgrover-gatk	SNP	*	map_l150_m1_e0	homalt	99.5103	99.1484	99.8749	68.8906	11177	96	11177	14	10	71.4286
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
bgallagher-sentieon	SNP	ti	segdup	*	99.5103	99.8567	99.1663	89.5899	19509	28	19507	164	6	3.6585

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge