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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 176 177 178 179 180 181 182 183 184 ... 1720 1721 » 8951-9000 / 86044 show all
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
jmaeng-gatk	SNP	tv	*	homalt	99.5328	99.0793	99.9904	20.3157	373651	3472	373637	36	23	63.8889
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5328	99.2846	99.7822	62.2610	27480	198	27491	60	36	60.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5327	99.1851	99.8828	53.0235	4260	35	4260	5	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5327	99.1984	99.8692	31.8675	4579	37	4580	6	1	16.6667
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5326	100.0000	99.0695	50.6581	1580	0	1597	15	0	0.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5325	99.7837	99.2826	64.9925	1384	3	1384	10	0	0.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5323	99.5000	99.5646	79.8322	10747	54	10747	47	15	31.9149
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.5322	99.5322	99.5322	58.8745	851	4	851	4	0	0.0000
ghariani-varprowl	SNP	ti	HG002complexvar	*	99.5322	99.7412	99.3241	19.7678	507113	1316	507283	3452	789	22.8563
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5319	99.4945	99.5693	75.4597	33068	168	33062	143	107	74.8252
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5318	99.8122	99.2530	67.9437	1063	2	1063	8	8	100.0000
egarrison-hhga	SNP	tv	segdup	*	99.5315	99.6015	99.4616	90.4428	8498	34	8498	46	15	32.6087
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5315	99.4915	99.5716	59.7014	19761	101	19754	85	47	55.2941
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5315	99.5674	99.4957	65.2740	1381	6	1381	7	0	0.0000
bgallagher-sentieon	INDEL	I1_5	map_l100_m2_e0	homalt	99.5314	100.0000	99.0672	81.7749	531	0	531	5	4	80.0000
astatham-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.5314	100.0000	99.0672	81.9892	531	0	531	5	4	80.0000
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5314	99.8673	99.1977	62.4958	35372	47	35361	286	20	6.9930
hfeng-pmm3	INDEL	I1_5	map_l100_m2_e0	homalt	99.5314	100.0000	99.0672	80.3663	531	0	531	5	3	60.0000
hfeng-pmm2	INDEL	I1_5	map_l100_m2_e0	homalt	99.5314	100.0000	99.0672	80.7125	531	0	531	5	4	80.0000
hfeng-pmm3	INDEL	I1_5	HG002complexvar	het	99.5309	99.1588	99.9057	57.5378	18036	153	18015	17	6	35.2941
egarrison-hhga	SNP	ti	segdup	het	99.5306	99.5927	99.4687	89.2156	11981	49	11981	64	2	3.1250
ckim-vqsr	INDEL	I1_5	map_l100_m2_e0	homalt	99.5305	99.8117	99.2509	82.4688	530	1	530	4	3	75.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5305	99.7647	99.2974	52.1032	848	2	848	6	6	100.0000
ckim-gatk	SNP	tv	*	homalt	99.5305	99.0738	99.9914	20.3623	373630	3493	373616	32	19	59.3750
hfeng-pmm3	INDEL	*	func_cds	het	99.5305	99.0654	100.0000	46.0957	212	2	214	0	0
hfeng-pmm2	SNP	*	segdup	het	99.5302	99.7344	99.3269	90.9417	17271	46	17265	117	0	0.0000
jmaeng-gatk	SNP	ti	func_cds	*	99.5302	99.8912	99.1718	29.3312	13772	15	13770	115	1	0.8696
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5299	99.1222	99.9409	66.9776	16826	149	16910	10	6	60.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5299	99.1222	99.9409	66.9776	16826	149	16910	10	6	60.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5298	99.0776	99.9861	69.5819	21697	202	21585	3	3	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5296	99.5296	99.5296	81.1592	1058	5	1058	5	2	40.0000
dgrover-gatk	INDEL	I1_5	*	*	99.5294	99.3841	99.6753	59.0782	149736	928	149786	488	385	78.8934
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5294	99.2958	99.7642	84.2672	846	6	846	2	2	100.0000
dgrover-gatk	SNP	*	map_l100_m0_e0	homalt	99.5293	99.1738	99.8873	60.6890	11524	96	11524	13	9	69.2308
jli-custom	INDEL	D1_5	map_siren	homalt	99.5293	99.4863	99.5723	80.0137	1162	6	1164	5	5	100.0000
ltrigg-rtg2	INDEL	D1_5	*	het	99.5293	99.4473	99.6114	53.9225	87090	484	86889	339	71	20.9440
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5292	99.4658	99.5927	55.2671	3910	21	3912	16	4	25.0000
qzeng-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5290	99.4853	99.5728	52.8503	10050	52	10023	43	23	53.4884
raldana-dualsentieon	INDEL	D1_5	map_siren	homalt	99.5289	99.4007	99.6575	79.9209	1161	7	1164	4	4	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.5845	845	7	845	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5289	99.3598	99.6985	56.1737	27780	179	27779	84	9	10.7143
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5289	99.9220	99.1388	74.4236	30737	24	30737	267	261	97.7528
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.7237	845	7	845	1	0	0.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.5845	845	7	845	1	1	100.0000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5288	99.4462	99.6115	59.5139	19752	110	19745	77	49	63.6364
raldana-dualsentieon	INDEL	*	*	homalt	99.5287	99.8738	99.1860	57.6626	125014	158	125023	1026	1009	98.3431
jpowers-varprowl	SNP	ti	func_cds	*	99.5285	99.5285	99.5285	26.5751	13722	65	13722	65	9	13.8462
rpoplin-dv42	SNP	tv	HG002compoundhet	het	99.5284	99.3794	99.6779	54.5836	4644	29	4642	15	10	66.6667

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