PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 174 175 176 177 178 179 180 181 182 ... 1720 1721 » 8851-8900 / 86044 show all
astatham-gatk	SNP	tv	*	*	99.5449	99.1184	99.9751	22.0764	961141	8549	961059	239	61	25.5230
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5445	99.1568	99.9353	61.6132	10819	92	10815	7	5	71.4286
cchapple-custom	SNP	ti	HG002compoundhet	homalt	99.5445	99.1480	99.9443	27.6293	7331	63	7173	4	4	100.0000
jpowers-varprowl	SNP	*	map_siren	homalt	99.5443	99.4144	99.6746	55.8957	54833	323	54834	179	129	72.0670
ghariani-varprowl	SNP	*	func_cds	*	99.5441	99.8512	99.2389	30.8362	18123	27	18123	139	14	10.0719
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5440	99.8969	99.1935	59.0506	3874	4	3936	32	0	0.0000
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	homalt	99.5439	99.1894	99.9010	45.4107	13338	109	13119	13	8	61.5385
bgallagher-sentieon	INDEL	D1_5	*	*	99.5437	99.4494	99.6383	60.2111	145937	808	145993	530	397	74.9057
egarrison-hhga	SNP	*	map_l100_m1_e0	*	99.5435	99.2404	99.8485	62.8269	71853	550	71854	109	49	44.9541
cchapple-custom	SNP	tv	segdup	*	99.5434	99.8008	99.2874	93.0362	8515	17	8499	61	9	14.7541
ckim-dragen	INDEL	*	HG002complexvar	homalt	99.5434	99.8039	99.2843	57.4048	26974	53	26911	194	188	96.9072
hfeng-pmm3	INDEL	I1_5	map_l125_m1_e0	homalt	99.5434	100.0000	99.0909	81.2073	327	0	327	3	2	66.6667
jli-custom	INDEL	I1_5	map_l125_m1_e0	homalt	99.5434	100.0000	99.0909	81.7780	327	0	327	3	2	66.6667
hfeng-pmm2	INDEL	I1_5	map_l125_m1_e0	homalt	99.5434	100.0000	99.0909	81.8382	327	0	327	3	2	66.6667
hfeng-pmm1	INDEL	I1_5	map_l125_m1_e0	homalt	99.5434	100.0000	99.0909	82.1429	327	0	327	3	2	66.6667
bgallagher-sentieon	INDEL	I1_5	map_l125_m1_e0	homalt	99.5434	100.0000	99.0909	82.9104	327	0	327	3	2	66.6667
astatham-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.5434	100.0000	99.0909	83.2146	327	0	327	3	2	66.6667
egarrison-hhga	SNP	*	map_l100_m2_e0	*	99.5430	99.2483	99.8395	64.7214	73408	556	73409	118	50	42.3729
hfeng-pmm3	SNP	ti	map_l250_m2_e0	homalt	99.5429	99.5998	99.4860	87.7295	1742	7	1742	9	2	22.2222
hfeng-pmm2	SNP	ti	map_l250_m2_e0	homalt	99.5429	99.5998	99.4860	87.7706	1742	7	1742	9	2	22.2222
cchapple-custom	INDEL	I1_5	HG002complexvar	homalt	99.5426	99.4200	99.6654	46.3203	13370	78	12809	43	42	97.6744
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5425	99.2565	99.8300	53.1529	2937	22	2937	5	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5424	99.7679	99.3178	59.4259	3869	9	3931	27	1	3.7037
hfeng-pmm2	SNP	ti	map_l100_m2_e1	*	99.5423	99.5494	99.5352	66.9275	49262	223	49255	230	30	13.0435
asubramanian-gatk	SNP	tv	func_cds	*	99.5422	99.4967	99.5877	36.6971	4349	22	4348	18	0	0.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5421	99.7007	99.3840	44.2028	10326	31	10326	64	61	95.3125
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5421	99.6910	99.3935	43.8031	10325	32	10325	63	62	98.4127
jli-custom	SNP	ti	map_siren	het	99.5420	99.4806	99.6035	52.5864	62058	324	62054	247	50	20.2429
ckim-vqsr	INDEL	I1_5	map_l125_m1_e0	homalt	99.5420	99.6942	99.3902	83.8741	326	1	326	2	1	50.0000
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5418	99.9350	99.1517	74.5652	30741	20	30741	263	257	97.7186
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5418	99.2552	99.8299	54.5384	14660	110	14675	25	12	48.0000
jlack-gatk	SNP	*	HG002compoundhet	*	99.5417	99.7018	99.3822	42.1778	25745	77	25738	160	46	28.7500
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5417	99.5043	99.5791	77.6913	6624	33	6624	28	9	32.1429
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5413	99.0868	100.0000	78.2783	651	6	651	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5413	99.0868	100.0000	78.5149	651	6	651	0	0
jmaeng-gatk	SNP	tv	*	het	99.5410	99.5807	99.5013	31.3482	589215	2481	589142	2953	52	1.7609
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5409	99.1719	99.9126	55.4663	25149	210	25156	22	13	59.0909
rpoplin-dv42	SNP	*	HG002compoundhet	het	99.5408	99.3864	99.6957	45.1283	14091	87	14087	43	32	74.4186
hfeng-pmm2	SNP	*	map_siren	het	99.5406	99.5406	99.5405	57.6094	90573	418	90559	418	33	7.8947
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5405	99.5949	99.4862	63.6798	11063	45	11037	57	16	28.0702
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5400	99.2100	99.8721	70.2148	30518	243	30461	39	32	82.0513
hfeng-pmm2	SNP	ti	map_l100_m1_e0	*	99.5399	99.5410	99.5389	65.3094	47711	220	47704	221	30	13.5747
hfeng-pmm3	INDEL	I1_5	map_l100_m2_e1	homalt	99.5392	100.0000	99.0826	80.4869	540	0	540	5	3	60.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5392	100.0000	99.0826	64.4372	216	0	216	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	map_l100_m2_e1	homalt	99.5392	100.0000	99.0826	80.8099	540	0	540	5	4	80.0000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5392	100.0000	99.0826	67.8940	216	0	216	2	2	100.0000
eyeh-varpipe	SNP	tv	map_l125_m2_e1	hetalt	99.5392	100.0000	99.0826	73.6715	30	0	108	1	0	0.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5392	100.0000	99.0826	66.3060	216	0	216	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	map_l100_m2_e1	homalt	99.5392	100.0000	99.0826	81.8454	540	0	540	5	4	80.0000
bgallagher-sentieon	INDEL	*	func_cds	het	99.5392	100.0000	99.0826	49.7696	214	0	216	2	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge