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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8751-8800 / 86044 show all
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5570
99.1179
100.0000
57.0236
247222247200
jlack-gatkINDELD1_5HG002complexvarhet
99.5570
99.5377
99.5763
55.9428
2066996206818829
32.9545
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5568
99.6967
99.4174
37.3360
4602144607278
29.6296
rpoplin-dv42SNPtvmap_l100_m1_e0homalt
99.5567
99.3365
99.7779
62.4922
89836089832018
90.0000
jmaeng-gatkSNP*HG002complexvar*
99.5566
99.1508
99.9656
19.5091
7479756406747823257106
41.2451
ckim-dragenINDELI1_5*homalt
99.5565
99.7948
99.3194
55.1956
6030412460271413409
99.0315
bgallagher-sentieonSNPtvmap_siren*
99.5565
99.7083
99.4051
58.5993
457961344578827436
13.1387
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5563
99.1458
99.9703
67.1493
168301451683055
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5563
99.1458
99.9703
67.1493
168301451683055
100.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5562
99.3991
99.7137
77.6038
6617406617195
26.3158
ckim-dragenSNPtvmap_l150_m1_e0homalt
99.5559
99.4171
99.6950
66.7792
39232339231210
83.3333
cchapple-customSNPtvfunc_cds*
99.5556
99.9085
99.2053
32.6708
436744369350
0.0000
ckim-vqsrINDEL*HG002complexvarhet
99.5556
99.3270
99.7852
57.9433
45901311455189861
62.2449
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5556
99.1696
99.9446
40.0259
1803215118029102
20.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
gduggal-snapfbSNP*HG002complexvarhomalt
99.5552
99.6857
99.4250
21.2913
2876689072877331664399
23.9784
hfeng-pmm3SNP*map_l125_m1_e0*
99.5551
99.4838
99.6266
69.4654
450932344508716926
15.3846
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5550
99.1139
100.0000
47.7303
156614156600
ckim-gatkSNPtifunc_cdshet
99.5548
99.9412
99.1713
33.6071
849958497711
1.4085
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5544
99.2984
99.8118
74.6933
212315212141
25.0000
jlack-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5542
99.4802
99.6283
49.3638
66983567002514
56.0000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5541
99.2049
99.9057
74.5256
212117211921
50.0000
ckim-dragenSNPtimap_l125_m2_e0homalt
99.5541
99.2604
99.8495
63.2256
1127484112791716
94.1176
hfeng-pmm3SNP*map_l100_m2_e1het
99.5538
99.4499
99.6580
66.2190
466402584662916014
8.7500
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5537
99.1915
99.9186
53.5276
613450613450
0.0000
bgallagher-sentieonSNPtimap_l125_m0_e0homalt
99.5535
99.2875
99.8209
66.4916
445932445986
75.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5532
99.4766
99.6299
68.0748
3231173230125
41.6667
astatham-gatkINDEL*func_cds*
99.5531
99.7753
99.3318
44.9080
444144631
33.3333
bgallagher-sentieonINDEL*func_cds*
99.5531
99.7753
99.3318
44.7724
444144631
33.3333
dgrover-gatkINDEL*func_cds*
99.5531
99.7753
99.3318
45.1100
444144631
33.3333
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5527
99.6020
99.5035
66.4780
10014100253
60.0000
ltrigg-rtg2INDEL**homalt
99.5524
99.2554
99.8512
52.3128
124239932124115185162
87.5676
hfeng-pmm3SNP*map_l100_m2_e0het
99.5523
99.4461
99.6587
66.2016
461422574613115814
8.8608
hfeng-pmm2INDELI1_5HG002complexvar*
99.5522
99.2597
99.8464
56.6743
33116247331595138
74.5098
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5522
99.5025
99.6020
65.6057
10005100143
75.0000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5517
99.4030
99.7009
65.6624
9996100032
66.6667
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5517
99.4030
99.7009
66.4548
9996100032
66.6667
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5517
99.4030
99.7009
66.4548
9996100032
66.6667
ndellapenna-hhgaINDEL*func_cds*
99.5516
99.7753
99.3289
89.8846
444144430
0.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.5515
99.1544
99.9518
47.1169
621553621533
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5504
99.4030
99.6982
59.0103
999699131
33.3333
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
hfeng-pmm1SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5502
99.2026
99.9003
37.1632
1803814518035183
16.6667
hfeng-pmm2SNPtimap_sirenhet
99.5502
99.5223
99.5781
56.1068
620842986207526319
7.2243
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5499
99.3263
99.7744
49.3526
13279132730
0.0000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5497
99.6000
99.4995
76.1480
2988122982154
26.6667
ltrigg-rtg1INDELD1_5HG002complexvarhomalt
99.5497
99.1413
99.9615
53.6591
10507911038143
75.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5496
99.5667
99.5326
76.5043
2987132981144
28.5714