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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8651-8700 / 86044 show all
rpoplin-dv42SNPtimap_sirenhet
99.5664
99.3973
99.7362
53.8516
620063766199716494
57.3171
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5664
99.3506
99.7831
28.4161
459346011
100.0000
hfeng-pmm3SNP*map_l125_m2_e1*
99.5664
99.4979
99.6351
71.1769
469652374695917226
15.1163
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5663
99.6528
99.4801
69.4386
574257431
33.3333
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5663
99.6000
99.5327
76.7518
2988122982144
28.5714
egarrison-hhgaSNPtiHG002compoundhethetalt
99.5663
99.1364
100.0000
22.9530
574557400
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5662
99.3506
99.7826
28.3489
459345911
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5662
99.2623
99.8720
56.6274
390229390250
0.0000
raldana-dualsentieonSNPtvmap_siren*
99.5658
99.6081
99.5235
57.2670
45750180457422198
3.6530
jlack-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.5658
99.5452
99.5863
69.3755
48152248152010
50.0000
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5654
99.2416
99.8913
28.9575
916791911
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5654
99.3064
99.8258
36.8073
171812171933
100.0000
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
99.5652
99.5652
99.5652
67.4221
229122911
100.0000
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5652
99.3492
99.7821
62.0766
13749137430
0.0000
ndellapenna-hhgaSNPtisegdup*
99.5651
99.6059
99.5244
88.6856
1946077194609333
35.4839
rpoplin-dv42SNPtvmap_l100_m2_e0homalt
99.5649
99.3488
99.7820
64.8909
91546091542018
90.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5648
99.1334
100.0000
32.4169
457640457200
egarrison-hhgaSNPtimap_l100_m1_e0*
99.5648
99.2719
99.8594
62.6430
47582349475836731
46.2687
egarrison-hhgaSNPtimap_l100_m2_e0*
99.5647
99.2770
99.8541
64.5210
48607354486087132
45.0704
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5647
99.1333
100.0000
30.5303
915891700
hfeng-pmm3INDELI1_5map_l125_m2_e1homalt
99.5646
100.0000
99.1329
83.0475
343034332
66.6667
hfeng-pmm2INDELI1_5map_l125_m2_e1homalt
99.5646
100.0000
99.1329
83.5473
343034332
66.6667
jli-customINDELI1_5map_l125_m2_e1homalt
99.5646
100.0000
99.1329
83.5317
343034332
66.6667
hfeng-pmm1INDELI1_5map_l125_m2_e1homalt
99.5646
100.0000
99.1329
83.9219
343034332
66.6667
astatham-gatkINDELI1_5map_l125_m2_e1homalt
99.5646
100.0000
99.1329
84.6970
343034332
66.6667
bgallagher-sentieonINDELI1_5map_l125_m2_e1homalt
99.5646
100.0000
99.1329
84.4843
343034332
66.6667
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5646
99.1989
99.9329
79.3662
148612149011
100.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5646
100.0000
99.1329
58.6124
343034332
66.6667
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5646
99.1329
100.0000
30.3228
171515170500
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5646
99.1329
100.0000
74.3783
343334000
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5645
99.8024
99.3278
58.3031
60601260584141
100.0000
ckim-dragenSNP*map_l125_m2_e0homalt
99.5644
99.3151
99.8150
63.8939
17256119172613229
90.6250
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5642
99.5193
99.6091
77.5046
6625326625268
30.7692
ndellapenna-hhgaSNPtimap_l150_m0_e0homalt
99.5641
99.2756
99.8543
71.8779
274120274144
100.0000
hfeng-pmm3SNP*map_l125_m2_e0*
99.5641
99.4949
99.6335
71.1339
464872364648117126
15.2047
raldana-dualsentieonSNP*map_siren*
99.5640
99.5698
99.5582
54.3006
14559962914557664630
4.6440
jlack-gatkSNP**het
99.5639
99.9321
99.1985
27.0831
18723151272187219015127441
2.9153
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5638
99.6361
99.4916
74.0824
13695137070
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5635
99.6780
99.4493
63.4150
216772167120
0.0000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5635
99.5014
99.6257
47.9205
3991203992154
26.6667
ckim-vqsrINDELI1_5map_l125_m2_e1homalt
99.5633
99.7085
99.4186
85.2740
342134221
50.0000
hfeng-pmm3SNPtimap_l100_m2_e1het
99.5633
99.4315
99.6955
65.7255
3078417630777949
9.5745
ckim-gatkINDELI1_5*het
99.5633
99.6774
99.4495
61.8943
7878625578766436147
33.7156
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5632
99.4406
99.6861
52.5328
16009158853
60.0000
dgrover-gatkSNPtimap_l150_m2_e1homalt
99.5631
99.2331
99.8953
71.0135
763459763486
75.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5630
99.4272
99.6991
49.6904
36452136451111
100.0000
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5625
99.4792
99.6460
61.1149
573356320
0.0000
dgrover-gatkSNPtvmap_l125_m2_e1homalt
99.5624
99.2591
99.8675
67.1759
602945602985
62.5000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5620
99.4169
99.7076
57.3034
341234110
0.0000