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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 169 170 171 172 173 174 175 176 177 ... 1720 1721 » 8601-8650 / 86044 show all
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5732	99.3661	99.7812	63.9280	10033	64	10032	22	17	77.2727
hfeng-pmm1	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.2103	1166	3	1166	7	7	100.0000
hfeng-pmm3	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.3382	1166	3	1166	7	6	85.7143
astatham-gatk	SNP	tv	map_l100_m1_e0	homalt	99.5729	99.2591	99.8887	59.2933	8976	67	8976	10	6	60.0000
hfeng-pmm2	SNP	*	map_l150_m0_e0	homalt	99.5726	99.7065	99.4390	76.7349	4077	12	4077	23	8	34.7826
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5726	99.1784	99.9701	49.4910	10019	83	10019	3	3	100.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5726	99.3603	99.7859	85.7055	466	3	466	1	1	100.0000
hfeng-pmm3	SNP	*	map_l150_m0_e0	homalt	99.5725	99.6821	99.4632	76.5815	4076	13	4076	22	7	31.8182
hfeng-pmm1	SNP	ti	map_l100_m2_e0	*	99.5722	99.3566	99.7887	64.0145	48646	315	48639	103	32	31.0680
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5721	99.2498	99.8965	56.0085	28048	212	27998	29	16	55.1724
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5720	99.5845	99.5594	59.6473	27563	115	27568	122	11	9.0164
dgrover-gatk	INDEL	D1_5	map_siren	homalt	99.5720	99.4863	99.6578	81.5178	1162	6	1165	4	4	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5717	99.1471	100.0000	85.6437	465	4	465	0	0
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5717	99.1471	100.0000	79.3245	465	4	453	0	0
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5715	99.4508	99.6924	63.7612	11047	61	11021	34	16	47.0588
astatham-gatk	INDEL	D1_5	HG002complexvar	*	99.5714	99.3825	99.7611	58.5986	32513	202	32567	78	66	84.6154
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5713	99.3652	99.7783	74.4113	3600	23	3600	8	6	75.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.5712	99.5238	99.6187	62.3069	1045	5	1045	4	4	100.0000
ckim-gatk	INDEL	*	*	homalt	99.5712	99.8778	99.2664	58.9388	125019	153	125032	924	905	97.9437
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5711	99.3100	99.8335	74.5893	3598	25	3598	6	2	33.3333
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5710	99.3151	99.8282	17.5637	580	4	581	1	1	100.0000
ckim-dragen	SNP	tv	map_l150_m2_e0	homalt	99.5708	99.4367	99.7053	69.4134	4060	23	4060	12	10	83.3333
hfeng-pmm1	SNP	ti	*	hetalt	99.5708	99.6564	99.4854	47.7130	580	2	580	3	3	100.0000
ckim-gatk	SNP	tv	*	*	99.5705	99.3991	99.7425	27.2376	963863	5827	963776	2488	84	3.3762
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	18.1946	579	5	580	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	17.6136	579	5	580	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	25.7325	579	5	583	0	0
dgrover-gatk	SNP	*	map_siren	het	99.5699	99.6197	99.5201	59.7603	90645	346	90631	437	77	17.6201
hfeng-pmm3	INDEL	D1_5	map_l125_m1_e0	homalt	99.5696	99.4269	99.7126	82.3350	347	2	347	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	*	het	99.5696	99.7077	99.4320	57.4420	87318	256	87348	499	434	86.9739
ckim-gatk	SNP	*	HG002complexvar	*	99.5695	99.1746	99.9675	19.4723	748154	6227	748002	243	101	41.5638
hfeng-pmm1	SNP	ti	map_l100_m1_e0	*	99.5693	99.3532	99.7862	62.2569	47621	310	47614	102	32	31.3725
rpoplin-dv42	SNP	tv	map_l100_m2_e1	homalt	99.5691	99.3550	99.7841	64.9074	9242	60	9242	20	18	90.0000
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5691	99.7274	99.4112	46.0147	2195	6	2195	13	6	46.1538
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5689	99.4260	99.7122	48.3103	2425	14	2425	7	3	42.8571
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5687	99.2552	99.8842	53.3003	14660	110	14664	17	12	70.5882
egarrison-hhga	SNP	ti	map_l100_m2_e1	*	99.5683	99.2846	99.8537	64.5157	49131	354	49132	72	32	44.4444
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5683	99.7837	99.3539	64.4733	1384	3	1384	9	0	0.0000
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
astatham-gatk	INDEL	D1_5	*	*	99.5682	99.4433	99.6934	60.4898	145928	817	145983	449	317	70.6013
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5680	100.0000	99.1398	77.7565	922	0	922	8	3	37.5000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5680	99.2210	99.9174	48.2147	2420	19	2420	2	0	0.0000
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5679	99.2416	99.8964	30.1737	916	7	964	1	1	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	homalt	99.5677	99.2411	99.8964	59.9180	7715	59	7715	8	6	75.0000
jmaeng-gatk	INDEL	*	HG002complexvar	het	99.5676	99.3876	99.7482	58.0104	45929	283	45560	115	73	63.4783
ckim-vqsr	INDEL	*	*	homalt	99.5675	99.8658	99.2711	58.9429	125004	168	125017	918	901	98.1481
jli-custom	SNP	tv	segdup	*	99.5673	99.7773	99.3581	90.4270	8513	19	8513	55	6	10.9091
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
raldana-dualsentieon	SNP	tv	segdup	*	99.5671	99.7656	99.3693	91.0002	8512	20	8508	54	6	11.1111
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5671	100.0000	99.1379	69.7128	230	0	230	2	2	100.0000

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