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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 168 169 170 171 172 173 174 175 176 ... 1720 1721 » 8551-8600 / 86044 show all
hfeng-pmm1	SNP	ti	map_siren	het	99.5806	99.3331	99.8292	52.2251	61966	416	61957	106	24	22.6415
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5798	99.5507	99.6089	75.0780	5096	23	5094	20	10	50.0000
eyeh-varpipe	SNP	*	*	hetalt	99.5795	99.8852	99.2757	41.9596	870	1	7539	55	52	94.5455
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5795	99.7661	99.3937	76.6906	2133	5	2131	13	5	38.4615
hfeng-pmm3	SNP	*	segdup	het	99.5790	99.7344	99.4241	89.8527	17271	46	17265	100	0	0.0000
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5789	99.5781	99.5798	24.6835	236	1	237	1	1	100.0000
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5789	99.5842	99.5736	56.7742	479	2	467	2	1	50.0000
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5785	99.8122	99.3458	67.3382	1063	2	1063	7	7	100.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5783	99.7296	99.4274	58.3882	2951	8	2952	17	2	11.7647
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5782	99.3986	99.7586	57.7309	2479	15	2479	6	2	33.3333
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5782	99.6004	99.5561	52.7078	2243	9	2243	10	0	0.0000
asubramanian-gatk	INDEL	I1_5	func_cds	homalt	99.5781	99.1597	100.0000	31.3953	118	1	118	0	0
eyeh-varpipe	SNP	*	map_l150_m1_e0	hetalt	99.5781	100.0000	99.1597	73.6142	20	0	118	1	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m1_e0	homalt	99.5779	99.4932	99.6627	79.8505	589	3	591	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	HG002complexvar	*	99.5778	99.2956	99.8615	56.6148	33128	235	33171	46	29	63.0435
ckim-gatk	SNP	tv	func_cds	*	99.5776	99.7941	99.3620	38.5208	4362	9	4361	28	0	0.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m1_e0	homalt	99.5773	99.4932	99.6616	80.9170	589	3	589	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l100_m1_e0	homalt	99.5773	99.4932	99.6616	83.0562	589	3	589	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.7775	471	2	471	2	2	100.0000
astatham-gatk	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.7984	471	2	471	2	2	100.0000
ckim-vqsr	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8593	471	2	471	2	2	100.0000
dgrover-gatk	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8776	471	2	471	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.4837	471	2	471	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.5664	471	2	471	2	2	100.0000
jli-custom	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.5135	471	2	471	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.3820	471	2	471	2	2	100.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5772	99.1580	100.0000	57.3253	2473	21	2473	0	0
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5772	99.8940	99.2624	72.0923	1884	2	1884	14	11	78.5714
ckim-gatk	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8593	471	2	471	2	2	100.0000
jpowers-varprowl	SNP	ti	*	*	99.5767	99.5483	99.6052	21.1558	2076086	9421	2076295	8230	1307	15.8809
hfeng-pmm3	INDEL	D1_5	map_l100_m1_e0	homalt	99.5766	99.3243	99.8302	79.6546	588	4	588	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l100_m1_e0	homalt	99.5766	99.3243	99.8302	80.5031	588	4	588	1	1	100.0000
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5765	99.8591	99.2956	64.7620	27639	39	27629	196	19	9.6939
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	23.6246	235	2	236	0	0
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	23.6246	235	2	236	0	0
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	22.9917	235	2	278	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	23.6246	235	2	236	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	39.9497	235	2	239	0	0
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	24.0385	235	2	237	0	0
ckim-dragen	SNP	tv	map_l150_m2_e1	homalt	99.5761	99.4436	99.7089	69.3912	4111	23	4111	12	10	83.3333
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5761	99.5795	99.5726	29.1625	1421	6	1398	6	2	33.3333
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5758	99.3915	99.7609	70.9351	5390	33	5423	13	4	30.7692
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5758	99.3915	99.7609	70.9351	5390	33	5423	13	4	30.7692
hfeng-pmm1	SNP	ti	map_l100_m2_e1	*	99.5757	99.3634	99.7889	64.0077	49170	315	49163	104	32	30.7692
jlack-gatk	INDEL	*	HG002complexvar	homalt	99.5756	99.8076	99.3448	56.8540	26975	52	26988	178	171	96.0674
astatham-gatk	INDEL	*	*	homalt	99.5755	99.8874	99.2657	58.8575	125031	141	125041	925	908	98.1622
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5749	99.1533	100.0000	79.4702	1054	9	1054	0	0
mlin-fermikit	SNP	ti	func_cds	homalt	99.5745	99.8294	99.3210	18.8179	5266	9	5266	36	34	94.4444
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.5738	99.3617	99.7868	68.2894	467	3	468	1	1	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.5738	99.3617	99.7868	68.6707	467	3	468	1	1	100.0000

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