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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 166 167 168 169 170 171 172 173 174 ... 1720 1721 » 8451-8500 / 86044 show all
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5930	99.2808	99.9072	72.4630	5384	39	5384	5	5	100.0000
egarrison-hhga	SNP	*	HG002compoundhet	hetalt	99.5928	99.3039	99.8833	23.6185	856	6	856	1	1	100.0000
egarrison-hhga	SNP	tv	HG002compoundhet	hetalt	99.5928	99.3039	99.8833	23.6185	856	6	856	1	1	100.0000
raldana-dualsentieon	SNP	*	segdup	*	99.5928	99.7934	99.3931	89.8391	28009	58	28003	171	10	5.8480
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5927	99.1886	100.0000	51.1512	489	4	488	0	0
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5925	99.4826	99.7026	70.3810	1346	7	1341	4	3	75.0000
gduggal-bwafb	SNP	ti	map_l100_m1_e0	homalt	99.5923	99.2984	99.8880	61.5927	17834	126	17834	20	12	60.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5922	99.5471	99.6374	86.6820	1099	5	1099	4	4	100.0000
jli-custom	INDEL	D1_5	segdup	*	99.5918	99.5467	99.6370	94.3313	1098	5	1098	4	1	25.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5914	99.4172	99.7661	48.7717	853	5	853	2	1	50.0000
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5913	99.8586	99.3255	71.8824	3532	5	3534	24	24	100.0000
hfeng-pmm3	INDEL	I1_5	HG002complexvar	*	99.5912	99.2956	99.8886	56.4158	33128	235	33172	37	24	64.8649
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5910	99.3338	99.8496	31.5262	7306	49	7302	11	3	27.2727
hfeng-pmm3	SNP	ti	map_l125_m2_e1	*	99.5907	99.5093	99.6723	71.0190	30419	150	30415	100	16	16.0000
hfeng-pmm1	SNP	*	map_siren	het	99.5907	99.3571	99.8255	53.5727	90406	585	90392	158	38	24.0506
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e0	homalt	99.5905	99.5090	99.6721	81.7529	608	3	608	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l100_m2_e0	homalt	99.5905	99.5090	99.6721	83.7116	608	3	608	2	2	100.0000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5902	99.2647	99.9178	64.5481	1215	9	1215	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e0	homalt	99.5898	99.3453	99.8355	80.5937	607	4	607	1	1	100.0000
hfeng-pmm3	SNP	ti	map_l125_m2_e0	*	99.5898	99.5076	99.6722	70.9814	30109	149	30105	99	16	16.1616
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5898	99.1830	100.0000	59.0142	1214	10	1214	0	0
hfeng-pmm1	INDEL	D1_5	map_l100_m2_e0	homalt	99.5898	99.3453	99.8355	81.4067	607	4	607	1	1	100.0000
dgrover-gatk	SNP	ti	map_siren	het	99.5897	99.6105	99.5689	58.1271	62139	243	62130	269	51	18.9591
gduggal-bwafb	SNP	ti	map_l100_m2_e0	homalt	99.5892	99.2954	99.8846	63.9034	18180	129	18180	21	13	61.9048
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5885	99.1803	100.0000	69.3671	121	1	121	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5885	99.1803	100.0000	70.1235	121	1	121	0	0
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5885	99.1803	100.0000	71.7290	121	1	121	0	0
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5885	99.1803	100.0000	67.9894	121	1	121	0	0
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.5885	99.1803	100.0000	62.8483	121	1	120	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5885	99.1803	100.0000	71.9258	121	1	121	0	0
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5884	99.5263	99.6506	48.9164	3992	19	3993	14	1	7.1429
jli-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5883	99.8077	99.3700	59.7371	55524	107	55520	352	27	7.6705
hfeng-pmm1	SNP	*	map_l100_m2_e1	*	99.5878	99.3979	99.7783	64.6489	74287	450	74276	165	49	29.6970
ckim-dragen	SNP	tv	map_l125_m2_e1	homalt	99.5877	99.4238	99.7522	65.1046	6039	35	6039	15	13	86.6667
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5875	99.1784	100.0000	85.2685	845	7	845	0	0
gduggal-snapplat	SNP	tv	func_cds	homalt	99.5875	99.1784	100.0000	26.2009	1690	14	1690	0	0
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5875	99.1784	100.0000	84.7445	845	7	845	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5873	99.2770	99.8996	46.3020	3982	29	3982	4	0	0.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e0	homalt	99.5873	99.4505	99.7245	83.3867	362	2	362	1	1	100.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5869	99.1772	100.0000	48.3179	1567	13	1567	0	0
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5868	99.9441	99.2321	39.7088	10726	6	10726	83	1	1.2048
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5867	99.2941	99.8810	43.2816	844	6	839	1	0	0.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5867	99.3693	99.8051	53.1359	6145	39	6145	12	0	0.0000
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5866	99.8768	99.2982	57.0448	17829	22	17828	126	5	3.9683
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5866	99.8975	99.2777	41.4403	10721	11	10721	78	1	1.2821
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5862	99.7647	99.4083	59.0715	17809	42	17808	106	7	6.6038
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5862	100.0000	99.1758	63.0457	361	0	361	3	1	33.3333
cchapple-custom	INDEL	D1_5	HG002complexvar	homalt	99.5858	99.5565	99.6150	53.3069	10551	47	10092	39	36	92.3077
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5857	99.4940	99.6776	63.2345	2163	11	2164	7	2	28.5714
astatham-gatk	INDEL	I1_5	*	het	99.5857	99.4610	99.7107	60.4880	78615	426	78596	228	141	61.8421

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