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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 165 166 167 168 169 170 171 172 173 ... 1720 1721 » 8401-8450 / 86044 show all
ckim-gatk	SNP	tv	*	het	99.5973	99.6088	99.5858	30.9441	589381	2315	589308	2451	61	2.4888
gduggal-bwaplat	SNP	*	func_cds	homalt	99.5972	99.1976	100.0000	22.2746	6923	56	6923	0	0
gduggal-bwafb	SNP	*	map_l100_m1_e0	homalt	99.5971	99.3186	99.8771	62.3452	26819	184	26819	33	19	57.5758
asubramanian-gatk	SNP	*	func_cds	het	99.5968	99.6147	99.5789	34.4684	11118	43	11115	47	1	2.1277
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5967	99.5697	99.6236	75.3470	33093	143	33087	125	100	80.0000
jli-custom	SNP	*	segdup	*	99.5966	99.8397	99.3547	89.2512	28022	45	28022	182	12	6.5934
jmaeng-gatk	SNP	*	*	homalt	99.5965	99.2051	99.9909	17.4792	1170780	9381	1170757	106	69	65.0943
bgallagher-sentieon	INDEL	D1_5	map_l100_m2_e1	homalt	99.5964	99.5161	99.6769	83.7873	617	3	617	2	2	100.0000
qzeng-custom	SNP	tv	*	homalt	99.5964	99.2947	99.8999	20.4155	374463	2660	372209	373	242	64.8794
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e1	homalt	99.5964	99.5161	99.6769	81.8369	617	3	617	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e1	homalt	99.5962	99.4624	99.7305	83.3707	370	2	370	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5960	99.4864	99.7059	76.5153	1356	7	1356	4	1	25.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5960	99.4864	99.7059	77.5541	1356	7	1356	4	2	50.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5960	99.7232	99.4692	61.2535	55477	154	55466	296	29	9.7973
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5960	99.4864	99.7059	77.3522	1356	7	1356	4	2	50.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5960	99.4864	99.7059	77.2003	1356	7	1356	4	2	50.0000
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e1	homalt	99.5958	99.3548	99.8379	80.6765	616	4	616	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l100_m2_e1	homalt	99.5958	99.3548	99.8379	81.4993	616	4	616	1	1	100.0000
ckim-dragen	INDEL	D1_5	*	het	99.5957	99.7625	99.4294	59.4097	87366	208	87308	501	64	12.7745
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5956	99.4864	99.7050	76.9975	1356	7	1352	4	2	50.0000
jlack-gatk	SNP	tv	*	*	99.5956	99.9388	99.2547	27.4223	969097	593	969008	7276	194	2.6663
jlack-gatk	SNP	tv	map_siren	homalt	99.5956	99.2807	99.9124	53.4780	17116	124	17113	15	10	66.6667
gduggal-bwafb	SNP	*	map_l100_m2_e0	homalt	99.5956	99.3169	99.8758	64.6135	27335	188	27335	34	20	58.8235
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.5956	99.3947	99.7973	28.9459	2463	15	2462	5	1	20.0000
jli-custom	SNP	*	map_l150_m0_e0	homalt	99.5955	99.3641	99.8280	71.6988	4063	26	4063	7	7	100.0000
jlack-gatk	INDEL	I1_5	HG002complexvar	het	99.5954	99.5052	99.6857	57.8787	18099	90	18080	57	28	49.1228
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5951	99.7972	99.3939	56.8439	492	1	492	3	0	0.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5949	99.6524	99.5376	63.4713	860	3	861	4	3	75.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5947	99.6620	99.5275	51.8290	2949	10	2949	14	1	7.1429
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5945	99.3642	99.8259	36.7938	1719	11	1720	3	3	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	64.2502	859	4	860	3	2	66.6667
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.7950	99.3947	49.7872	2434	5	2463	15	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	61.5590	859	4	860	3	2	66.6667
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	64.2502	859	4	860	3	2	66.6667
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5944	99.5794	99.6093	76.9540	6629	28	6629	26	6	23.0769
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	63.5095	859	4	860	3	2	66.6667
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5943	99.5943	99.5943	58.4317	491	2	491	2	0	0.0000
ckim-gatk	SNP	ti	HG002complexvar	*	99.5943	99.2243	99.9671	17.9110	504492	3944	504432	166	74	44.5783
ckim-gatk	SNP	*	*	homalt	99.5941	99.1985	99.9929	17.5422	1170702	9459	1170679	83	52	62.6506
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.5939	99.2396	99.9506	44.1181	4046	31	4050	2	1	50.0000
egarrison-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5935	99.4554	99.7320	55.2895	20089	110	20097	54	39	72.2222
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5935	99.3915	99.7963	54.1550	490	3	490	1	0	0.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5935	99.3915	99.7963	55.2823	490	3	490	1	0	0.0000
astatham-gatk	SNP	*	*	*	99.5934	99.2091	99.9807	19.0428	3030461	24158	3030315	584	162	27.7397
gduggal-bwafb	SNP	ti	map_l100_m2_e1	homalt	99.5933	99.3025	99.8858	63.9101	18365	129	18365	21	13	61.9048
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.5932	99.6513	99.5352	81.3843	6859	24	6853	32	18	56.2500
ghariani-varprowl	SNP	ti	map_siren	homalt	99.5932	99.4435	99.7434	52.5183	37705	211	37706	97	56	57.7320
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5931	99.3054	99.8825	45.7630	3431	24	3401	4	4	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5931	99.6524	99.5338	59.0453	860	3	854	4	3	75.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5930	99.2808	99.9072	72.4630	5384	39	5384	5	5	100.0000

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